BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321137
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34170.1 | Symbols: | Protein of unknown function (DUF688) ... 2305 0.0
> AT2G34170.1 | Symbols: | Protein of unknown function (DUF688)
| chr2:14428215-14430266 FORWARD LENGTH=1870
Length=1870
Score = 2305 bits (1248), Expect = 0.0
Identities = 1479/1587 (93%), Gaps = 30/1587 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGAGAAAAAACTTAACTTCGATGCACCTCTTCTTTCAACGAGGAGGATGAAGAAA 60
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 84 ATGGCGGAGAAACAACTTAACTTCGATGCACCTCTTCTTTCAACAAGGAGGATGAAAAAA 143
Query 61 TCGGCAATGTCTGTACGCAGAAACATGCCAAAGAAGCTCACTGATGAGTCCAAGACAAGT 120
|| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 144 TCTGCAATCTCTGTACGCAGAAACATGCCAAAGCAGCTCACTGATGAGTCCAAGACAAGT 203
Query 121 GAATCTCTTCCTGTTTCAGTTCTTGT-C--GATCA--GGTTCCGGAATCTGCCTCTGTTC 175
||||||||| |||||||||||||||| | || || |||| | ||| | |||
Sbjct 204 GAATCTCTTTCTGTTTCAGTTCTTGTCCAAGA-CATGGGTT-TAG-ATCAG-----GTT- 254
Query 176 CTCTCAAATCTCCCTTGGAGGGCAAACATGTAGAAGAACATGCAGGAGAGAGTGAAGATG 235
| | | |||||||||||| | ||||||||||||||| | |||| ||||||||||||||
Sbjct 255 C-C-GGATTCTCCCTTGGAGAGTAAACATGTAGAAGAAGAAGCAGAAGAGAGTGAAGATG 312
Query 236 ATGATGTTTTCTCTGATGCCCTTGATACATTGTCTCTAAAGCATAGCATAAGTGGTGGTG 295
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 313 ATGATGTTTTCTCTGATGCCCTTGATACATTGTCTCTAAAGCAAAGCATAAGTGGTGGTG 372
Query 296 TTGTTGTTGAGGCAATGAAACCGTCAATGCCATCCGAGGATCCTCAATTCATGTTGGATC 355
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 373 GTGGTGTTGAGGCAATGAAACCGTCAATGCCATCTGAGGATCCTCAATTCATGTTGGATC 432
Query 356 GTTTCTTACCTGCTGCGAAATCCATGACTGTGGAGCAACCACCTCAATATGCTTGGAAGC 415
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 433 GTTTCTTACCTGCTGCGAAATCCTTGACTCTGGAGCAACCACCTCAATATTCTTGGAAGC 492
Query 416 GACAACCATTGCCCCTCATGTCTGAACCAATGAGACAGATTAGGGATATAGTACCAGCAG 475
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 493 GACAGCCATTGCCCCTCATGTCAGAACCAATGAGACAGATTAGAGATATAGTACCAGCAG 552
Query 476 AGAATCGTGCAACTCCTACAAGGTATGAGTCTAGTTTTACACCATCTTATTATCAGGACA 535
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 553 AGAATCGTGCAACTCCTACAAGGTATGAGTCTAGTTTTACTCCATCTTATTATCAGGACA 612
Query 536 TAGATGACGAAGAAAGCGAGGAGGATTCAGATGACGATGAAGTTTCTGAGTATCTTTCTA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TAGATGACGAAGAAAGCGAGGAGGATTCAGATGACGATGAAGTTTCTGAGTATCTTTCTA 672
Query 596 AGAGAGGCTGTGGGATGATGTCACCACAAATCTGCTTTAAAAACTCACTCGGTATGCTGA 655
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 673 AGAGAGGCTGTGGTATGATGTCTCCACAAATCTGCTTTAAAAACTCACTCGGTATGCTGA 732
Query 656 GCTCAGTGCATGGTCTTAAGGAGACACCTTACTCCCTGAGAACCCCAAGCCATGATCAAG 715
|||||||| |||||||||| |||| ||||||||| |||||||||||||||||||||||||
Sbjct 733 GCTCAGTGAATGGTCTTAAAGAGAAACCTTACTCTCTGAGAACCCCAAGCCATGATCAAG 792
Query 716 TGAAGTCAAGCAAGGTCGCTCAGCTCAAATCGCGGTTCCAATCTGTGAAAAAGCTCGCTC 775
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 793 TGAAGTCAAGCAAGGTCGCTCAGCTCAAATCTCGGTTCCAATCTGTGAAAAAGCTCGCTC 852
Query 776 TTGATTATAAGCAAAAGTTGGGAAGTTTAGCTCAATCTCCAGTACACCCAAGTGTTGGCA 835
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 853 TTGATTATAAGCAAAAGTTGGGAAGTATAGCTCAGTCTCCAGTACACCCAAGTGTTGGGA 912
Query 836 AGAAGTTTAACTTTGGATCTGAACAACATGAATCGAACCTGAGTTCTGCAAGTAGGCCAT 895
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 913 AGAAGTTTAACTTTGGTTCTGAACAACATGAATCGAA---GAGTTCTGCAAGTAGGCCAT 969
Query 896 CATCTCCTTACAGACAAACTGGCTGTATGTCACCGTATCGCAGTGTAGGAAACAGTTCAC 955
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 970 CATCTCCTTACAGACAAAATGGCTGTATGTCACCGTATCGCAGTGTAGGAAACAGTTCTC 1029
Query 956 CTCTTCACCCTGCGGGTTTTCCC-GGGACTCGTAAGGAAGCAGAGATTATGAGAGCTAAC 1014
|||||||| |||||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1030 CTCTTCACGCTGCGGGTTT-CCCTGGGACTCGTAAGGAAGCAGAGGTTATGAGAGCTAAC 1088
Query 1015 AGGTTGAACAAGCATATAAGAAACATAAGCAAGTCTCAGGAATTACTCTATCCAAAAAGT 1074
||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1089 AGGTTGAACAAGCATATCAGAAACATAAGCAAGTCTCACGAATCACTCTATCCAAAAAGT 1148
Query 1075 ACAAGACAAGCCTGTTCAACAAGCTCTGCCATGGAGAAGACATTATATGTTGACACAGAG 1134
|||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1149 ACAAAACAAGACTGTTCAACGAGCTCTGCCATGGAGAAGACATTATATGTTGACTCAGAG 1208
Query 1135 AATTCTCCAAAGACCAGCAATGACCATGGAAACTCGAATGTCAAGAATTTGCCAGAAACA 1194
|||||||||| |||||||||||| || | | ||| ||||||||||| ||||||||||||
Sbjct 1209 AATTCTCCAAGGACCAGCAATGAGAATCGTAGCTCTAATGTCAAGAAATTGCCAGAAACA 1268
Query 1195 ATTTCAGAGGAACCTGAAATGGAGGGAAAGAAACCGAAAGCCGCTCACGAGCTTAAGGCT 1254
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1269 ATTTCAGAGGAACCTGAAATGGAGGGAAAGAAACCGAAAGCCGTTCGCGAGCTTAAGGCT 1328
Query 1255 GTAGAAACTCTTACTATTAGCAGTGGAATCAAGATGGTGAAGGCAGATGAGTTGGAAAAG 1314
||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 1329 GTAGAAACTCTTAGTATTAGCAGTGGAGTCAAGATGATGAAGGCAGATGAGTTGGGAAAG 1388
Query 1315 AACAACAGTGGCTGTGATCTATCTCCAC---CACC------ACCCAAAAAGCCTTCTGAG 1365
|||||||||||||||||||||||||||| | || ||||||||||||||| |||
Sbjct 1389 AACAACAGTGGCTGTGATCTATCTCCACTTGCTCCGCCGCCACCCAAAAAGCCTTCCGAG 1448
Query 1366 TCTTGGCTTTTCAGTAATCTTCCTTCAGTAAGCTCGAAGATCCCTTCACGGAGATATCTG 1425
|||||||||||||||||||| || ||||||||||| ||||||||||||| |||||| |||
Sbjct 1449 TCTTGGCTTTTCAGTAATCTGCCGTCAGTAAGCTCAAAGATCCCTTCACCGAGATACCTG 1508
Query 1426 TTTCATCCCCaaaaaaaGAATGTCGAAGAAAACTCCACAATTGTTACCAAGTGGGAAACT 1485
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1509 TTTCATCCCCAAAAAAAGAATGTTGAAGAAAACTCCACAAGTGTTACCAAGTGGGAAACT 1568
Query 1486 ATAGTCAAGACTTCTTATACACACAGAGATCACATACGCTATTCTGAAGAACTCGTTGCT 1545
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1569 ATAGTCAAGACTTCTTATACGCACAGAGATCATATACGCTATTCTGAAGAACTCGTTGCT 1628
Query 1546 CGTTCATCCTGCCAATCAAAAACTTAG 1572
| |||||| ||||||||||||||||||
Sbjct 1629 CATTCATCTTGCCAATCAAAAACTTAG 1655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77610042570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5