BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321182
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34650.1 | Symbols: PID, ABR | Protein kinase superfamily pr... 2069 0.0
> AT2G34650.1 | Symbols: PID, ABR | Protein kinase superfamily
protein | chr2:14589760-14591788 REVERSE LENGTH=1722
Length=1722
Score = 2069 bits (1120), Expect = 0.0
Identities = 1261/1328 (95%), Gaps = 13/1328 (1%)
Strand=Plus/Plus
Query 1 ATGTTACGAGAATCAGACGGTGAGATGAGTTTAGGAACAACAAACTCACCGATAAGCAGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ATGTTACGAGAATCAGACGGTGAGATGAGTTTAGGAACAACAAACTCACCGATAAGCAGC 291
Query 61 GGAACAGAGAGTTGCAGTAGTTTCAGCCGGTTATCATTCGACGCGCCGCCGTCAACCACC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 292 GGAACAGAGAGTTGCAGCAGTTTCAGCCGGTTATCATTCGACGCGCCGCCGTC-A--A-- 346
Query 121 GCGATTATCCCCGAAGAAGAAAGCTTCCTATCTCTCAAACCTCACCGATCCTCAGATTTC 180
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 347 -C---TATCCCCGAAGAAGAAAGCTTCCTTTCTCTCAAACCTCACCGATCCTCAGATTTC 402
Query 181 GCTTACGCAGAGATCCGACGACGaaaaaaaCACGGTCTAACTTTCCGAGATTTTCGCCTC 240
|||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||||
Sbjct 403 GCTTACGCAGAGATCCGAAGACGAAAAAAACAAGGCCTAACCTTCCGAGATTTTCGCCTC 462
Query 241 ATGCGTCGTATCGGCGCCGGAGACATCGGAACAGTTTACTTATGTCGTCTCGCCGGAGAC 300
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 463 ATGCGTCGTATCGGCGCCGGCGACATCGGAACAGTTTACTTATGCCGTCTAGCCGGAGAC 522
Query 301 GAAGAAGAGAGCCGGAGTTCGTATTTCGCTATGAAAGTCGTGGATAAAGAAGCGCTTGCG 360
||||||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||
Sbjct 523 GAAGAAGAGAGCCGGAGCTCGTATTTTGCGATGAAAGTTGTGGATAAAGAAGCTCTTGCG 582
Query 361 TTGAAGAAGAAGATGCATAGAGCAGAGATGGAGAAAACGATCTTGAAAATGCTTGACCAT 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 583 TTGAAGAAGAAGATGCATAGAGCAGAGATGGAGAAAACGATTTTGAAAATGCTTGACCAT 642
Query 421 CCTTTTTTGCCGACCCTTTACGCTGAGTTTGAAGCGTCACATTTCTCTTGCATCGTTATG 480
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 643 CCATTTTTGCCGACTCTTTACGCTGAGTTTGAAGCCTCACATTTCTCTTGCATCGTTATG 702
Query 481 GAGTATTGCTCCGGCGGTGATTTACACTCTCTCCGTCATAGACAGCCTAC-CCGGAGATT 539
|| ||||||||||| ||||||||||||||||||||||||||||| ||| | |||| ||||
Sbjct 703 GAATATTGCTCCGGTGGTGATTTACACTCTCTCCGTCATAGACAACCT-CACCGGCGATT 761
Query 540 TTCCCTCTCATCCGCCAGATTTTATGCCGCCGAAGTTCTAGTGGCGTTAGAATATTTACA 599
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 762 CTCCCTCTCTTCCGCCAGATTTTATGCCGCCGAAGTTCTAGTGGCGTTAGAATATCTACA 821
Query 600 CATGTTGGGTATCATCTACAGAGATCTGAAGCCTGAAAATATCTTAGTTAGATCGGACGG 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 822 CATGTTGGGTATCATCTACAGAGATCTGAAGCCTGAAAATATCTTAGTTAGATCCGACGG 881
Query 660 TCACATTATGCTCTCGGACTTTGACCTCTCCT-TATGCTCCGACTCAATCGCAGCCGTTG 718
||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct 882 TCACATTATGCTCTCTGACTTTGACCTCT-CTCTATGCTCCGACTCAATCGCAGCCGTTG 940
Query 719 AATCTACCTCATCGTCGCCGGAGAATCACCAACTCCGTTCACCGCGACGACTCACTCGTC 778
||||| |||| || |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 941 AATCTTCCTCGTCTTCGCCGGAGAATCAACAACTCCGTTCACCGCGACGATTCACTCGTC 1000
Query 779 TGGCTAGACTTTTCCACCGAGTCATGCGGTCTAAAAAGGTTCAGACTTTAGAACCAAACC 838
| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1001 TCGCTAGACTTTTCCAACGAGTCTTGCGGTCTAAAAAGGTTCAGACTTTAGAACCAACCC 1060
Query 839 GTCTCTTTGTTGCTGAACCGGTTACCGCCCGGTCCGGTTCGTTCGTTGGTACGCATGAGT 898
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1061 GTCTCTTTGTTGCTGAACCGGTTACTGCCCGGTCCGGTTCGTTCGTTGGTACGCATGAAT 1120
Query 899 ACGTGGCACCAGAAGTAGCTTCAGGTGGATCACATGGTAATGCCGTTGACTGGTGGGCCT 958
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 ACGTGGCACCAGAAGTTGCTTCAGGTGGATCACATGGTAATGCCGTTGACTGGTGGGCCT 1180
Query 959 TTGGAGTGTTTCTCTACGAGATGATATACGGCAAGACTCCGTTCGTTGCGCCGACTAATG 1018
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1181 TTGGAGTGTTTCTCTACGAGATGATATATGGCAAGACTCCGTTCGTTGCGCCGACTAATG 1240
Query 1019 ACGTCATCCTCCGTAACATTGTGAAAAGACAGTTGAGTTTCCCGACTGATTCGCCGGCGA 1078
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 ACGTCATTCTCCGTAACATTGTGAAAAGACAGTTGAGTTTCCCGACTGATTCGCCGGCGA 1300
Query 1079 CTATGTTTGAGCTTCACGCGCGGAATTTGATTTCCGGGTTGCTTACCAAAGATCCGACTA 1138
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1301 CTATGTTTGAGCTTCATGCGCGGAATTTGATTTCCGGGTTGCTTAACAAAGATCCGACTA 1360
Query 1139 AAAGACTCGGGTCTCGGCGTGGTGCGGCGGAGGTTAAAGTACATCCTTTTTTCAAAGGTC 1198
||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1361 AAAGACTTGGGTCACGGCGAGGTGCGGCGGAGGTTAAAGTGCATCCTTTTTTCAAAGGTC 1420
Query 1199 TAAATTTTGCGCTCATACGTACACTTACTCCGCCGGAGATTCCTTCGTCCGTCGTCAAGA 1258
|||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1421 TAAACTTTGCGCTCATTCGTACGCTTACTCCGCCGGAGATTCCTTCTTCCGTCGTCAAGA 1480
Query 1259 AGCCGATGAAATCGGCGACGTTCGGTGGTAGGAGTAGTAACAAACCAGCGGCGTTCGATT 1318
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1481 AGCCGATGAAATCGGCGACGTTTAGTGGTAGAAGTAGTAACAAACCAGCGGCGTTCGATT 1540
Query 1319 ACTTTTGA 1326
||||||||
Sbjct 1541 ACTTTTGA 1548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65260708500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5