BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321223
Length=471
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35090.1 | Symbols: | Protein of unknown function (DUF1640)... 385 2e-106
AT2G35070.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 363 1e-99
> AT2G35090.1 | Symbols: | Protein of unknown function (DUF1640)
| chr2:14792171-14793032 FORWARD LENGTH=495
Length=495
Score = 385 bits (208), Expect = 2e-106
Identities = 302/343 (88%), Gaps = 24/343 (7%)
Strand=Plus/Plus
Query 1 ATGGCAATGCTTAAGCGCACGATTAGCATCGTAAGAACCGGAGGAGGTCTGAGTTATCGT 60
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 17 ATGGCAATGCTTAAGCGCACGATTAGTATCGTAAGAACCGGAAGAGGTCTGAGTTATCGT 76
Query 61 TCACTTTCTTCCGGGAACCATGTCGACACATTAGGAATGGTTAAGGCTCTAGAGGCTATC 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 77 TCACTTTCTTCCGGGAACCATGTCGACAAATTAGGAATGGTTAAGGCTCTAGAGGCGATC 136
Query 121 AACGTACCCTCGACACAAGCGGAGGCATTAACCGGCGCCATCACCGGTGGCTTTGAGTCG 180
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 137 AACGTACCCTCAACACAAGCGGAGGCATTAACCGGCGCCATCACCAGTGGCTTGGAGTCG 196
Query 181 GTGATGGAGAAAGTGAAAGCTGACAACGCCAAATCCGAGGCAAATCTTCTTTTCCAAACT 240
||| ||||||| |||||||| |||| |||||||||||||| || | | | || |
Sbjct 197 GTGGTGGAGAAGGTGAAAGCCGACATCGCCAAATCCGAGG-AA-TAT-C------AA--T 245
Query 241 TTCGAGTATCAATCAACTCGTGTTGCAGAAGAGGTTAGAAAACTGCGAGCCGATATTGAT 300
| | | | | | ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 246 --C-A--A-C--T-A----GTGTTGCAGAAGAGGTTCGAAAAATGCGAGCCGATATTAAT 292
Query 301 AAGATGCGAGCGGATATTGCTACAATGCAAGCCGAGAAGAGGT 343
||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 293 AAGGTGCGAGCGGATATTGCTACAATGCAAGCAGAGAAGAGGT 335
> AT2G35070.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: pollen tube development,
pollen development; LOCATED IN: mitochondrion; BEST Arabidopsis
thaliana protein match is: Protein of unknown function
(DUF1640) (TAIR:AT2G35090.1); Has 62 Blast hits to 62 proteins
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr2:14783291-14784710 FORWARD LENGTH=796
Length=796
Score = 363 bits (196), Expect = 1e-99
Identities = 298/343 (87%), Gaps = 24/343 (7%)
Strand=Plus/Plus
Query 1 ATGGCAATGCTTAAGCGCACGATTAGCATCGTAAGAACCGGAGGAGGTCTGAGTTATCGT 60
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 118 ATGGCAATGCTTAAGCGCACGATTAGCATCGTAAGAATCGGAAGAGGTCTGAGTTATCGT 177
Query 61 TCACTTTCTTCCGGGAACCATGTCGACACATTAGGAATGGTTAAGGCTCTAGAGGCTATC 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 178 TCACTTTCTTCCGGGAACCATGTCGACAAATTAGGAATGGTTAAGGCTCTAGAGGCGATC 237
Query 121 AACGTACCCTCGACACAAGCGGAGGCATTAACCGGCGCCATCACCGGTGGCTTTGAGTCG 180
||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 238 AACGTACCCTCAACACAAGCGGAGGCATTAACCGGCGCAATCACCAGTGGCTTTGAGTCG 297
Query 181 GTGATGGAGAAAGTGAAAGCTGACAACGCCAAATCCGAGGCAAATCTTCTTTTCCAAACT 240
||||||| ||| || ||||| |||| |||||||||||||| | | | ||| |
Sbjct 298 GTGATGGGGAAGGTTAAAGCCGACATCGCCAAATCCGAGG-AG-TAT--------AAA-T 346
Query 241 TTCGAGTATCAATCAACTCGTGTTGCAGAAGAGGTTAGAAAACTGCGAGCCGATATTGAT 300
| | | | || |||||||||||||| || ||||| ||||||||||||||||
Sbjct 347 --C-A--A-C--TC-----GTGTTGCAGAAGAGTTTCGAAAAATGCGAGCCGATATTGAA 393
Query 301 AAGATGCGAGCGGATATTGCTACAATGCAAGCCGAGAAGAGGT 343
|||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 394 AAGATGCGAGCGGATATTGCTACAATACAAGCAGAGGAGAGGT 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22404429562
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5