BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321255
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35430.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 883 0.0
> AT2G35430.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr2:14900872-14902385 REVERSE LENGTH=1029
Length=1029
Score = 883 bits (478), Expect = 0.0
Identities = 681/775 (88%), Gaps = 29/775 (4%)
Strand=Plus/Plus
Query 1 ATGAGTCACCGGCGAGATTCCGGCAGCGATGCAGTTCACGTGAGAATTGCCAACGACCCT 60
|||||||| |||||||||| |||||| |||||||||||||||||||| || ||||||||
Sbjct 129 ATGAGTCATCGGCGAGATTACGGCAGTGATGCAGTTCACGTGAGAATCACCCACGACCCT 188
Query 61 CCGCCGGATAATTGGTTTCCAAATCCCGGCGACAGTTCCGTCTGGGCCACTGAGGATGAT 120
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 189 CCGCCTGAGAATTGTTTTCCAAATTCCGGCGACAGTTCCGTCTGGGCCACTGAGGATGAT 248
Query 121 TACAGCCGTGTCT-GTTCAGTGAACCCCGATGATACGGAGTCTCCGAGCAAGAAGACACG 179
||||||||||||| | || | ||| | |||| | |||||||||||||||||||||||
Sbjct 249 TACAGCCGTGTCTGGGCCA-TAAACTCTGATGGCGCAGAGTCTCCGAGCAAGAAGACACG 307
Query 180 ATC-T--TCCTCCTCCGAGATCGGGAAATCGTTTTTCAAGACGAAGCTTTGCTTCAAATT 236
||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 308 ATCTTCCTCCTCCTCCGAGATCGGGAAATCGTTCTTCAAGACGAAGCTTTGCTTCAAATT 367
Query 237 CCGCTCCGGAACTTGTCCCTACCCCGCGACCTCTTGCCACTTTGCTCACAGCTCCGAAGA 296
|||| ||||||||||||||||| |||||| |||||||||||||||||||||| | || ||
Sbjct 368 CCGCGCCGGAACTTGTCCCTACTCCGCGAGCTCTTGCCACTTTGCTCACAGCGCGGAGGA 427
Query 297 GCTCCG---GCGTCCACCGCCGCCGCCCAATCGGCAGGAGACGGCG-GAGA-G-TGGAAG 350
|||||| | ||| ||||||||||||||| |||||||||||| | ||| | | |||
Sbjct 428 GCTCCGTCTTCCTCCGCCGCCGCCGCCCAATTGGCAGGAGACGGTGACAGAGGCTTCAAG 487
Query 351 --A-TTAGAAAGCTTTGCGATTAGTTTAGGTCCTCGTGGTTATGGTGATGCTAGCAATGT 407
| ||||||||||||| |||||||||| || | | | || |||||||
Sbjct 488 AAACAGAGAAAGCTTTGCGGTTAGTTTAGG-CC-C-------T--CG-TG---GCAATGT 532
Query 408 TGCTCAGACTTTGAAGCCTCCGAATTGGAAGACAAGGATTTGCAATAAGTGGGAGACTAC 467
|||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 533 TGCTCAGACTCTCAAGTCTCCGAATTGGAAGACAAGGATTTGCAATAAGTGGCAGACTAC 592
Query 468 GGGGTATTGTCCTTTTGGTACTAACTGCCATTTTGCTCATGGAGCTTCAGAGTTGCATAC 527
|| ||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 593 TGGCTATTGTCCTTTTGGTTCTCACTGCCATTTTGCTCATGGACCTTCAGAGTTGCATAC 652
Query 528 ATTTGGTGGAGGACTCGTTGAAGAAGAAGGTAAGATCGGAACATCCACCACTCCGGACAC 587
|||||| |||||||||||||||| |||| ||||||||||||||||| ||||| ||||||
Sbjct 653 ATTTGGCGGAGGACTCGTTGAAGGAGAATGTAAGATCGGAACATCCGCCACTTTGGACAC 712
Query 588 AATGCAGACAGGACAAGTAGACACAGTGCCTAGCCTTGTTTCTCCTGGAGTCCCGTCCCA 647
|| ||||| ||||||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct 713 AAAGCAGAGAGGACAAGTAGACACAGTGACTAGCCTTGTTTCTCCTGGAGTCTCATCCCA 772
Query 648 ACGGATATCTAGTGCTGTTACTCAGAAACCCAAAGGGGTCAGAACTCAACGGAAATGGAA 707
||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 773 ACGGACATCTAGTGCTGTTACGCAGAAACCCAACGGAGTCAGAACTCAACGGAAATGGAA 832
Query 708 AGGACCGGATAAAATCAGTCGGGTTTATGGTGATTGGATCGACGATATTGAATAA 762
|||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 833 AGGACCAGATAAAATCAGTCGTGTTTATGGTGATTGGATCGACGATATTGAGTAA 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5