BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321290
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35770.1 | Symbols: scpl28 | serine carboxypeptidase-like 28... 2084 0.0
> AT2G35770.1 | Symbols: scpl28 | serine carboxypeptidase-like
28 | chr2:15034037-15036518 REVERSE LENGTH=1552
Length=1552
Score = 2084 bits (1128), Expect = 0.0
Identities = 1303/1390 (94%), Gaps = 2/1390 (0%)
Strand=Plus/Plus
Query 1 ATGATGATCACaaaaaaaCTATATCAATGTATGTGTTTATTATGCATGGTGATTGCAATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 22 ATGATGATCACAAAAAAACTATATCAATGTATGTGTTTATTATGCATGGTGATTGCATTA 81
Query 61 TTAGACGTAGTGAGTAGTGATGATGCTAAAGAGCAAAAGATGAAGGACAAGATCATCTCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 82 TTAGACGTAGTGAGTAGTGATGATGCTAAAGAGCAAAAGATGAAGGACAAGATTATCTCT 141
Query 121 TTGCCAGGGCAACCTCCTAACCTCAATTTCTCTCAATTCTCTGGCTACGTCACTGTTGAT 180
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 142 TTGCCAGGCCAACCTCCTAACCTCAACTTCTCTCAATTTTCTGGCTACGTCACTGTTGAT 201
Query 181 TCCGCGGCTGGACGGAATCTTTTTTATTGGCTAACCGAAGCTCCTAGGCCCAGCGGTACG 240
||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 202 CCCGCGGCCGGACGGGCTCTCTTTTATTGGCTAACCGAAGCTCCTAGGCCTAGCGGAACG 261
Query 241 AAGCCCTTAGTTCTATGGCTCAATGGTGGTCCAGGATGCTCCTCCATTGCCTACGGTGCT 300
||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 262 AAGCCCTTAGTCCTATGGCTCAATGGTGGTCCAGGATGCTCCTCTATTGCTTATGGTGCT 321
Query 301 TCTGAGGAAGTTGGTCCATTTCGGGTTAATCCCGATGGAAAGACTCTT-CGTTTAAATCT 359
||||| |||||||||||||||||||||||||| || ||||||||| || ||| |||||||
Sbjct 322 TCTGAAGAAGTTGGTCCATTTCGGGTTAATCCAGACGGAAAGACT-TTGCGTCTAAATCT 380
Query 360 CTATGCTTGGAACAAAGTTGCAAATGTGTTATTTTTGGATTCACCGGCGGGTGTAGGTTT 419
||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 381 ATATGCTTGGAACAAAGTGGCAAATGTGTTATTTTTGGATTCACCGGCGGGAGTTGGTTT 440
Query 420 CTCTTACACAAACACTTCGTCAGACGAACTAACAGTGGGAGACAAGAGGGCAGGGGAGGA 479
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 441 CTCTTACACAAACACTTCGTCAGACGAACTAACCGTGGGAGACAAGAGAACAGGGGAGGA 500
Query 480 TGCATATAGATTCTTGGTGAGATGGATGGAGAGGTTCCCTGAGTACAAGGAAAGACCATT 539
||| ||||||||||||||||||||| ||||||||||||||||||| |||||| | | ||
Sbjct 501 TGCTTATAGATTCTTGGTGAGATGGTTGGAGAGGTTCCCTGAGTATAAGGAACGGGCTTT 560
Query 540 TTACATCGCCGGCGAGAGCTACGCTGGACATTATATTCCGGAGCTAGCTCAACTGATCGT 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 561 TTACATCGCCGGCGAGAGCTACGCTGGACATTATATTCCGGAGCTAGCCCAACTGATCGT 620
Query 600 CAACCGTAACAAAGGTGCCCAAAACCCAACTATCAATCTAAAAGGGATTCTGATGGGGAA 659
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 621 CAACCGTAACAAAGGTGCCAAAAATCCAACTATCAATCTAAAAGGGATTCTGATGGGGAA 680
Query 660 TCCCCTAGTGGATGATTATAATGACAACAAAGGGATGCGTGACTACTGGTGGAACCACGG 719
||| || || ||||| || |||||||||||||| |||||||||||||||||||| |||||
Sbjct 681 TCCTCTTGTCGATGACTACAATGACAACAAAGGAATGCGTGACTACTGGTGGAATCACGG 740
Query 720 GCTTATATCCGACGAAAGCTACAAGGACCTGACCAAGTGGTGTCTCAACGACTCCATCCT 779
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 741 GCTTATATCGGACGAAAGCTACAATGACCTGACCAAATGGTGTCTCAACGACTCCATCCT 800
Query 780 ATTTCCCAAGCCCAACTGCAACGCTGCTCTGAACCAAGCCTTGTCTGAGTTTGGTGACAT 839
|||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 ATTTCCAAAACTAAACTGCAACGCTGCTCTGAACCAAGCCTTGTCTGAGTTTGGTGACAT 860
Query 840 CGACCCTTACAACATCAATAGCCCTGCATGCATCACACATTCATCATCAAATGAGTGGAT 899
||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||
Sbjct 861 TGACCCTTACAACATCAATAGCCCTGCATGCACCACGCATGCATCATCAAATGAGTGGAT 920
Query 900 GCAAGCATGGCGGTATAGAGGGAATGATGAGTGTGTTGTGGGATATACACGCAAGTATAT 959
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 921 GCAAGCATGGCGGTATAGAGGGAACGATGAGTGTGTTGTGGGATACACACGCAAGTATAT 980
Query 960 GAACGATCTCGATGTGCACAAATCTTTCCATGCCCGCCTCAACCGCAGTACTCCTTGGAC 1019
|||||||| | ||||||||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct 981 GAACGATCCCAATGTGCACAAATCCTTCCATGCCCGTCTCAACGGCAGTACTCCTTGGAC 1040
Query 1020 CCCTTGCAGTCGTGTCATAAGAAAGAATTGGAAAGACTCACCTAAGTCCATGCTTCCCGT 1079
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1041 ACCTTGCAGTCGTGTGATAAGAAAGAATTGGAAAGACTCACCTAAGTCCATGCTTCCTAT 1100
Query 1080 CATCAAGAATCTTCTTCAAGCTCATCTCCGTATTTGGATCTTCAGTGGGGACTCGGACGC 1139
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1101 CATCAAGAATCTTCTTCAAGCTCATCTCCGCATTTGGATCTTCAGTGGGGACTCGGACGC 1160
Query 1140 AGTGTTACCGCTAAGTGGGACAAGGCATTCGATAAATGCAATGAAATTGAAGAGTAGCAA 1199
||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1161 GGTGTTGCCTCTAAGCGGGACGAGGCATTCGATTAATGCAATGAAATTGAAGAGTAGCAA 1220
Query 1200 AAGGTGGTATCCATGGTACCATTCACACGGCCTAGTTGGAGGTTGGAGCCAGGTTTACGA 1259
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1221 AAGGTGGTATCCATGGTACCATTCACACGGCCTAGTAGGAGGTTGGAGTCAGGTTTATGA 1280
Query 1260 AGATGGTTTGCTAACTTACGCGACCGTTAGAGCCGCAGGGCATGAGGTGCCATTGTCTCA 1319
||||| |||||||| ||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct 1281 GGATGGCTTGCTAACGTACACGACGGTTAGAGCAGCAGGGCATGAGGTGCCATTGTCTCA 1340
Query 1320 GCCTCGTCTCGCTCTTTTCCTCTTCACCCACTTTCTCGCCAACCACTCTCTTCCCTCCTC 1379
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1341 GCCTCGTCTCGCTCTTTTCCTCTTCACCCACTTCCTAGCCAACCACTCTCTTCCCTCCTC 1400
Query 1380 TTCCTCTTAA 1389
| ||||||||
Sbjct 1401 TCCCTCTTAA 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5