BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321332
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36270.1 | Symbols: ABI5, GIA1 | Basic-leucine zipper (bZIP)... 2013 0.0
> AT2G36270.1 | Symbols: ABI5, GIA1 | Basic-leucine zipper (bZIP)
transcription factor family protein | chr2:15204764-15207528
REVERSE LENGTH=1720
Length=1720
Score = 2013 bits (1090), Expect = 0.0
Identities = 1253/1331 (94%), Gaps = 13/1331 (1%)
Strand=Plus/Plus
Query 1 ATGGTAACTAGAGAAACGAAGTTGATGTCAGAGCGAGAAGTGGAGTCGTCGATGGGGCAA 60
||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| ||||
Sbjct 176 ATGGTAACTAGAGAAACGAAGTTGACGTCAGAGCGAGAAGTAGAGTCGTCCATGGCGCAA 235
Query 61 GCGAGACATAATGGAGGAGGTGGTGGTGAGAATCATCCGTTTACTTCATTGGGAAGACAA 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 236 GCGAGACATAATGGAGGAGGTGGTGGTGAGAATCATCCGTTTACTTCTTTGGGAAGACAA 295
Query 121 TCTTCTATCTACTCATTGACCCTCGACGAGTTCCAACATGCTCTATGTGAGAACGGCAAG 180
|| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 296 TCCTCTATCTACTCATTGACCCTTGACGAGTTCCAACATGCTTTATGTGAGAACGGCAAG 355
Query 181 AACTTCGGGTCGATGAACATGGACGAGTTTCTCGTCTCTATTTGGAACGCAGAGGAGAAT 240
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 356 AACTTTGGGTCCATGAACATGGACGAGTTTCTTGTCTCTATTTGGAACGCAGAGGAGAAT 415
Query 241 AATAACAATCAACAAGC-AGCAGCAGCAGCCGCAGCTTCACATTCTGTTCCGGCTAATCA 299
||||||||||||||| | |||||||||||| |||| ||||||||||||||||||||||||
Sbjct 416 AATAACAATCAACAA-CAAGCAGCAGCAGCTGCAGGTTCACATTCTGTTCCGGCTAATCA 474
Query 300 CAATGGTTTCAACAACAAC---AACAATGGAGGCGA----GG-G-TGGTGTCTTTGGTGG 350
||||||||||||||||||| |||||||||||||| || | |||||||||| ||||
Sbjct 475 CAATGGTTTCAACAACAACAATAACAATGGAGGCGAGGGTGGTGTTGGTGTCTTTAGTGG 534
Query 351 TGGTTCTAGGGGCAACGAAGAGGCTAATAATAAGAGAGGGATAGCGAAGGAGCCTAGTCT 410
||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| |||||||
Sbjct 535 TGGTTCTAGAGGCAACGAAGATGCTAACAATAAGAGAGGGATAGCGAACGAGTCTAGTCT 594
Query 411 TCCTCGACAAGGCTCGTTGACACTTCCAGCTCCGCTTTGTAGGAAGACTGTTGATGAGGT 470
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TCCTCGACAAGGCTCTTTGACACTTCCAGCTCCGCTTTGTAGGAAGACTGTTGATGAGGT 654
Query 471 TTGGTCTGAGATACATAGAGGTGGTGGTA-CTGGTGATGGTGGAGACAGTAATGGACGTA 529
||||||||||||||||||||||||||||| | ||| |||| |||||||| ||||||||||
Sbjct 655 TTGGTCTGAGATACATAGAGGTGGTGGTAGC-GGTAATGGAGGAGACAGCAATGGACGTA 713
Query 530 GTAGTAGTAGTAATGGTCAAAACAATGCGCAGAATGGCGGTGAGACTGCCGCTAGACAAC 589
|||||||||||||||| || |||||||| ||||| |||||||||||||| ||||||||||
Sbjct 714 GTAGTAGTAGTAATGGACAGAACAATGCTCAGAACGGCGGTGAGACTGCGGCTAGACAAC 773
Query 590 CGACTTTTGGTGAGATGACACTTGAGGATTTTTTAGTGAAGGCTGGTGTGGTCAGAGAAC 649
|||||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 774 CGACTTTTGGAGAGATGACACTTGAGGATTTCTTGGTGAAGGCTGGTGTGGTTAGAGAAC 833
Query 650 ATCCCACTAACCCTAAACCTAATCCAAACCCGAACCAAAACCAAAACCCATCTAGTGTTA 709
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 834 ATCCCACTAATCCTAAACCTAATCCAAACCCGAACCAAAACCAAAACCCGTCTAGTGTAA 893
Query 710 TACCCGCAGCTGCGCAACAGCAACTATATGGTGTGTTTCAAGGAACCGGTGATCCTACAT 769
||||||||||||| || || || || |||||||||||||||||||||||||||||| |||
Sbjct 894 TACCCGCAGCTGCACAGCAACAGCTTTATGGTGTGTTTCAAGGAACCGGTGATCCTTCAT 953
Query 770 TCCCAGGACAGGCCATGGGTGTAGGTGACCCATCAGGTTATGGTAAAAGGACAGGAGGAG 829
|||| || || || |||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 954 TCCCGGGTCAAGCTATGGGTGTGGGTGACCCATCAGGTTATGCTAAAAGGACAGGAGGAG 1013
Query 830 GAGGGTATCAGCAGGCGCCACCGGTTCAGGCAGGTGTTTGCTATGGAGGTGGTGGTGGGT 889
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 1014 GAGGGTATCAGCAGGCGCCACCAGTTCAGGCAGGTGTTTGCTATGGAGGTGGCGTTGGGT 1073
Query 890 TTGGAGCGGGTGGACAGCAAATGGGGATGGTTGGACCGTTAAGCCCGGTGTCGTCAGATG 949
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1074 TTGGAGCGGGTGGACAGCAAATGGGAATGGTTGGACCGTTAAGCCCGGTGTCTTCAGATG 1133
Query 950 GATTAGGACATGGACAAGTGGATAACATAGGAGGTCAGTATGGAGTGGATTTGGGAGGGC 1009
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1134 GATTAGGACATGGACAAGTGGATAACATAGGAGGTCAGTATGGAGTAGATATGGGAGGGC 1193
Query 1010 TAAGGGGAAGGAAAAGAGTAGTGGATGGTCCAGTGGAGAAAGTAGTGGAGAGAAGGCAGA 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1194 TAAGGGGAAGGAAAAGAGTAGTGGATGGTCCAGTGGAGAAAGTAGTGGAGAGAAGACAGA 1253
Query 1070 GGAGGATGATCAAGAACCGTGAGTCTGCTGCGAGGTCTAGAGCAAGAAAACAAGCATATA 1129
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1254 GGAGGATGATCAAGAACCGCGAGTCTGCTGCTAGATCTAGAGCAAGAAAACAAGCATATA 1313
Query 1130 CAGTGGAATTGGAAGCTGAACTGAACCAGTTGAAAGAAGAGAACGCGCAGCTAAAACATG 1189
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1314 CAGTGGAATTGGAAGCTGAACTTAACCAGTTGAAAGAAGAGAATGCGCAGCTAAAACATG 1373
Query 1190 CATTGGCGGAGTTGGAGAGGAAGAGGAAGCAACAGTATTTTGAGAGTTTGAAGACAAGGG 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1374 CATTGGCGGAGTTGGAGAGGAAGAGGAAGCAACAGTATTTTGAGAGTTTGAAGTCAAGGG 1433
Query 1250 CACAACCGAAATTGCCAAAATCGAATGGGAGATTGCGGACTTTGATGAGGAACCCGAGTT 1309
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1434 CACAACCGAAATTGCCGAAATCGAACGGGAGATTGCGGACATTGATGAGGAACCCGAGTT 1493
Query 1310 GCCCACTCTAA 1320
| |||||||||
Sbjct 1494 GTCCACTCTAA 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64959505230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5