BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321345
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36360.5 | Symbols: | Galactose oxidase/kelch repeat superf... 2106 0.0
> AT2G36360.5 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:15243413-15247627 REVERSE LENGTH=1691
Length=1691
Score = 2106 bits (1140), Expect = 0.0
Identities = 1420/1546 (92%), Gaps = 56/1546 (4%)
Strand=Plus/Plus
Query 1 ATGCATCACTGGGTTCAAGCTTCTTCTTCCGATTTCAGTGGAACTCCTCCGCAGGCGCGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 105 ATGCATCACTGGGTTCAAGCTTCTTCTTCCGATTTCAGTGGAACTCCTCCGCAAGCTCGG 164
Query 61 AGTGGACATACAGCTGTCAATGTCGGAAAATCCATGGTGGTGGTGTTCGGTGGTCTCGTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 AGTGGACATACAGCTGTCAATGTCGGAAAATCCATGGTGGTGGTGTTCGGTGGTCTCGTC 224
Query 121 GATAAGAAATTCCTCAGTGATATAATTGTTTATGATATCGAAAACAAACTCTGGTTTGAG 180
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 225 GATAAGAAATTCCTCAGCGATATAATTGTTTATGATATTGAAAACAAACTCTGGTTTGAG 284
Query 181 CCAGAGTGTACTGGCAGCGAGTCTGAAGGACAAGTAGGTCCTACACCGCGTGCATTTCAT 240
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 285 CCAGAATGTACTGGCAGCGAGTCTGAAGGACAAGTGGGTCCTACACCTCGTGCGTTTCAT 344
Query 241 GTTGCCATCACAATCGATTGCCATATGTTCATCTTTGGTGGACGTTCTGGTGGCAAAAGG 300
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 345 GTTGCTATTACAATCGATTGTCATATGTTCATCTTTGGTGGACGTTCTGGTGGCAAGAGG 404
Query 301 TTGGGGGACTTCTGGGTTCTTGATACAG--A--TATATG---------GC---AG-T--- 340
||||| |||||||||||||| ||||||| | |||||| || || |
Sbjct 405 TTGGGTGACTTCTGGGTTCTAGATACAGGTACGTATATGCTAACATTTGCTGCAGATATA 464
Query 341 -GG---T---CTGAACTGACTAGCTTCGGCGACTTACCTACACCTCGTGATTTTGCTGCT 393
|| | ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TGGCAGTGGTCTGAATTGACTAGCTTCGGCGACTTACCTACACCTCGTGATTTTGCTGCC 524
Query 394 GCTGCAGCTATCGGGAACCAAAAAATTGTATTGTGTGGCGGCTGGGATGGTAAAAAGTGG 453
||||| ||||| |||| |||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 525 GCTGCTGCTATTGGGAGCCAAAAAATTGTGTTGTGCGGCGGCTGGGACGGTAAAAAGTGG 584
Query 454 CTGTCAGATGTATATGTTATGGATACAATGTCCCTTGAATGGATGGAGCTGTCGGTTTCG 513
||||||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 585 CTGTCAGATGTTTATGTTATGGACACAATGTCCCTTGAATGGCTGGAGCTATCGGTTTCA 644
Query 514 GGGTCACTGCCACCTCCTAGATGTGGTCATACAGCCACCATGGTTGAGAAACGGTTACTT 573
|||||| ||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 645 GGGTCATTGCCACCTCCTAGATGTGGTCATACGGCCACAATGGTGGAGAAACGATTACTT 704
Query 574 GTTTTTGGTGGCCGAGGAGGTGGTGGCCCAATCATGGGTGATTTGTGGGCTTTGAAGGGT 633
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GTTTTCGGTGGCCGAGGAGGTGGTGGCCCAATCATGGGTGATTTGTGGGCTTTGAAGGGT 764
Query 634 CTGATAGATGAAGAGCGTGAAACACCTGGATGGACCCAACTCAAGCTTCCTGGACAAGCA 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 CTGATAGATGAAGAGCGTGAAACACCTGGATGGACCCAACTCAAGCTTCCTGGACAAGCA 824
Query 694 CCATCATCTCGATGTGGTCACACAGTTACATCTGGAGGGCATTATCTTCTGTTGTTTGGG 753
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 825 CCATCATCTCGATGTGGTCATACAGTTACATCTGGAGGACATTATCTTCTGTTATTTGGG 884
Query 754 GGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTCTATTATAATGATACTATAATT 813
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 885 GGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATT 944
Query 814 TTGGACAGAGTAACTGCTCAGTGGAAGCGTTTACCAATAAGCAATGAGCCTCCACCTCCT 873
||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||
Sbjct 945 TTGGACAGAGTAACTGCTCAGTGGAAGCGCTTACCAATAGGCAATGAGCCTCCTCCTCCT 1004
Query 874 CGAGCTTACCATACCATGACT-GTTATTGGGGCTCGTCATCTTTTAATTGGTGGTTTTGA 932
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1005 CGAGCTTACCATACCATGACTTGT-ATTGGAGCTCGTCATCTTTTAATTGGTGGTTTTGA 1063
Query 933 TGGAAAATTGACCTTCGGTGATCTCTGGTGGTTGGTTCCCGAAGATGATCCGATAGCCAA 992
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1064 TGGAAAATTGACCTTCGGTGATCTCTGGTGGTTAGTTCCCGAAGATGATCCGATAGCCAA 1123
Query 993 GAGGTCTTCTGTACCTCAACTTATAAACCCTCCTGAAATTAAAGAGTCAGAGAGAGA--- 1049
|||||||||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1124 GAGGTCTTCTGTGCCTCAAGTTGTAAACCCTCCTGAAATTAAAGAGTCAGAGAGAGAGTT 1183
Query 1050 --A----TTG-GA-------CA----AGGAAAGGGGACAAGAGGGATGCAGTATTGTTGA 1091
| ||| || || |||||||||||||||| |||| ||||||||||||
Sbjct 1184 GGACAAGTTGAGAGTTTGGTCACGGCAGGAAAGGGGACAAGATGGATTCAGTATTGTTGA 1243
Query 1092 ATTGCAAAAGAAAATGGGAATATCTGTTTCATCAGGGTTGCGCCTTCAAATTCCCGAGGA 1151
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 CTTGCAACAGAAAATGGGAATATCTGTTTCATCAGGGTTGCGCCTTCAAATTCCCGAGGA 1303
Query 1152 GTCAGAAGATCAAGAATTCGTTGAATTAGGAACAAGATTAATTGAGGGAGATGTAGTTGA 1211
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 GTCAGAAGATCAAGAGTTTGTTGAATTAGGAACAAGATTAATTGAGGGAGATGTAGTTGA 1363
Query 1212 TGGCCGGGCCTCTATGATACAGATGGCCGCTCAAGCACTTCGTCAGCATTGGAAAGAGTC 1271
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1364 TGAACGGGCCTCTATGATTCAGATGGCCGCTCAAGCACTTCGTCAGCATTGGAAACAGTC 1423
Query 1272 CACTCCAAGAACTTTACAACTAAAAGATCTTGGTTCCTTACTTCGAGATTATCAGCGTTC 1331
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1424 CACTCCGAGAACTTTACAACTAAAAGAGCTTGGTTCCTTACTTCGAGATTATCAGCGA-C 1482
Query 1332 TTTCTTACCCGAAAATTCACGTGATACACAGAGCAGCTTAACATCTACTGATTTTGGCCT 1391
|| |||| |||| ||||| | | |||||||||||||||||||| |||||||||||||
Sbjct 1483 TTG-TTACACGAATTTTCAC-T-A--CACAGAGCAGCTTAACATCTGCTGATTTTGGCCT 1537
Query 1392 CCCTGGAGCGAAGACCTTTACGTTTTATCATATGAAAAGCTCTTCCGAGTTGCGGATTAA 1451
||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1538 CCCTGGAACGAAGACCTTTACGTTTTATCATATCAAAAGTTCTTCCGAGTTGCGGATTAA 1597
Query 1452 TGACATCCCGAAGTTGCTGGAAGAATACAAAACCCTTCTAATCTGA 1497
||||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct 1598 TGACATCTCGAAGTTGCTGGAAGAATACAAAACTCTTGTAATCTGA 1643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5