BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321364
Length=2025
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36570.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3147 0.0
> AT2G36570.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:15335496-15337927 FORWARD LENGTH=2308
Length=2308
Score = 3147 bits (1704), Expect = 0.0
Identities = 1916/2019 (95%), Gaps = 11/2019 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGCTAAAcctcttcttcctcttctcctccttctccttcttcacctctcaatctcc 60
||||||||||||||||||||| || | || || || ||||||||||| ||||||||| ||
Sbjct 88 ATGGCTGCTAAACCTCTTCTT-CT-TCCT-CTTCTCCTCCTTCTTCATCTCTCAATCACC 144
Query 61 ttTGCTCAAAACGACACAAATGCACTCACACTCTTCCGTCTCCAAACCGACACACACGGC 120
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 145 TTAGCTCAAAACGACACAAATGCTCTCACACTCTTCCGTCTCCAAACCGACACACACGGC 204
Query 121 AACCTCGCCGGAAACTGGACCGGCTCCGACGCTTGTTCCTCCTCATGGCACGGCGTTTCT 180
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 205 AACCTCGCCGGAAACTGGACCGGCTCCGACGCTTGTACCTCCTCATGGCAAGGCGTTTCT 264
Query 181 TGCTCACCATCTTCACACCGCGTCACCGAActctctctcccttccctctccttacgagga 240
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 265 TGCTCACCATCTTCACACCGCGTCACTGAACTATCTCTCCCTTCCCTCTCCTTACGAGGA 324
Query 241 ccattaacctctctctcctcctTAGACCAGCTTCGTCTTCTTGATCTCCACGATAACAGA 300
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 325 CCATTAACCTCTCTCTCCTCCTTAGACCAACTTCGTCTTCTTGACCTCCACGATAACAGA 384
Query 301 CTCAACGGCACCGTTTCACCACTCACAAACTGTACAAACCTCAGACTCGTTTATCTCGCC 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 385 CTCAACGGCACCGTTTCACCACTCACAAACTGTAAAAACCTCAGACTCGTTTATCTCGCC 444
Query 361 GGTAACGATCTCTCCGGTGAGATTCCTAAAGAGATCTCTTTTCTTAAACGAATGATACGT 420
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 445 GGTAACGATCTCTCCGGTGAGATTCCTAAAGAGATATCCTTTCTTAAACGGATGATACGT 504
Query 421 CTTGATCTCTCTGATAACAATATCCGTGGAGTTATACCAAGAGAGATTCTCGGGTTTACC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 CTTGATCTCTCTGATAACAATATCCGTGGAGTTATACCAAGAGAGATTCTCGGGTTTACC 564
Query 481 CGGATTTTAACGATCCGGCTCCAGAACAATGAGTTAACGGGTCGGATCCCGGATTTTTCT 540
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 565 CGGGTTTTAACGATCCGGATCCAGAACAATGAGTTAACGGGTCGGATCCCGGATTTTTCT 624
Query 541 CAGATGAAGTCACTTCTTGAATTGAATGTTTCGTTCAATGAATTGCACGGAAATGTCTCC 600
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 625 CAGATGAAGTCACTTCTTGAATTGAATGTTTCCTTCAATGAGTTGCACGGAAACGTCTCC 684
Query 601 GACGGTGTGGTGAAGAAATTTGGAGACTTGAGCTTTTCCGGTAACGAAGGATTGTGCGGG 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 685 GACGGCGTGGTGAAGAAATTTGGAGACTTGAGCTTTTCCGGTAACGAAGGATTATGCGGG 744
Query 661 TCGGATCCTTTACCGGTTTGTACTTTCACAAATGACCCTGAATCTTCAAACACTGATCAG 720
|||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||
Sbjct 745 TCGGATCCTTTACCGGTTTGTACTATCACAAACGACCCGGAATCTTCTAACACTGATCAG 804
Query 721 ATTGTTCCGTCGAATCCTACGTCGATTCCGCATTCTCCGGTTACCGTCGGAGAACCGGAA 780
|||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 805 ATTGTTCCGTCGAATCCTACTTCGATTCCGCATTCTCCGGTTAGCGTTAGAGAACCGGAA 864
Query 781 ATTCACGGTCATAGAGGGGTTAAACCGGGAATAATCGCCGCGGTTATCGGCGGTTGTGTG 840
|||||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 865 ATTCACAGTCATAGAGGGATTAAACCGGGAATAATCGCTGCGGTTATCGGTGGTTGCGTG 924
Query 841 GCGGTTATTGTTTTAGTATCTTTCGGTTTTGCTTTCTGTTGTGGAAGATTAGACCGTAGC 900
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 925 GCGGTTATTGTTTTAGTATCTTTTGGTTTTGCTTTCTGTTGTGGAAGATTAGACCGTAAC 984
Query 901 GGCGGTGGAGGATCAAAACCCGGAAGTGTAGAGAGTGGTTTCGTCGGAGGAG-A-A-GGG 957
|||| || ||||||| ||||||||||||||| ||||||||||||||||| | | |||
Sbjct 985 GGCGAA--AG-ATCAAAATCCGGAAGTGTAGAGACTGGTTTCGTCGGAGGAGGAGAAGGG 1041
Query 958 AAGAGACGAAGCAGCTACGGTGAAGGAGGAGACAGTGATGCGACGTCGGCGACAGATAGG 1017
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1042 AAGAGACGAAGCAGTTACGGAGAAGGAGGAGAGAGTGATGCGACGTCGGCGACAGATAGG 1101
Query 1018 AGCAGACTTGTGTTTTTCGAGAGGAGGAAACAGTTTGAGCTTGAGGATTTGTTGAAAGCA 1077
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1102 AGCAGACTTGTGTTTTTCGAGAGGAGGAAACAGTTTGAGCTTGATGATTTGTTGAAAGCA 1161
Query 1078 TCTGCGGAGATGCTTGGGAAAGGAAGTCTAGGGACGGTGTACAAGGCGGTGCTT-GACGA 1136
||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||||
Sbjct 1162 TCTGCGGAGATGCTTGGGAAAGGGAGTTTAGGGACGGTGTACAAGGCGGTG-TTAGACGA 1220
Query 1137 TGGCTCAACAACGGTGGCGGTGAAGCGGCTTAAAGACGCGAATCCATGTCCGAGGAAAGA 1196
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 CGGCTCAACGACTGTGGCGGTGAAGCGGCTTAAAGACGCGAATCCATGTCCGAGGAAAGA 1280
Query 1197 GTTTGAGCAGTACATGGAGATTATTGGTAGGCTTAAACACCAAAACGTTGTTAAGCTCAG 1256
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1281 GTTTGAGCAGTATATGGAGATTATTGGTAGGCTTAAACACCAAAACGTTGTTAAGCTAAG 1340
Query 1257 AGCTTATTACTACGCTAAAGAAGAGAAGCTCTTAGTTTATGAGTATCTTCCTAATGGAAG 1316
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1341 AGCTTATTACTATGCTAAAGAAGAGAAGCTCTTGGTTTATGAGTATCTTCCTAATGGAAG 1400
Query 1317 CTTGCACTCCCTTCTTCATGGGAACCGAGGTCCTGGACGGATTCCATTGGATTGGACGAC 1376
||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 1401 CTTGCACTCTCTTCTTCATGGGAATCGAGGACCAGGACGGATTCCATTGGATTGGACGAC 1460
Query 1377 GAGGATTAGTCTAATGTTAGGAGCAGCGAGAGGCTTAGCAAAGATTCACGACGAGTATAG 1436
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1461 GAGGATTAGTCTAATGTTAGGAGCAGCGAGAGGATTAGCGAAGATTCACGACGAGTATAG 1520
Query 1437 CATCTCAAAGATCCCTCACGGCAACATCAAATCCTCCAATGTTCTATTGGACAGAAACGG 1496
|||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1521 CATCTCAAAGATACCACACGGCAATATCAAATCCTCTAATGTTCTATTGGACAGAAACGG 1580
Query 1497 CGTCGCGTTAATCGCTGATTTCGGTTTATCACTTTTGCTAAACCCGGTTCATGCTATCGC 1556
||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1581 CGTCGCGCTAATAGCTGATTTCGGTTTATCACTTTTGCTAAACCCGGTTCACGCTATCGC 1640
Query 1557 ACGGTTAGGAGGCTACCGTGCGCCGGAACAGTCAGAGATCAAACGGCTCTCTCAGAAAGC 1616
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1641 TCGGTTAGGAGGATACCGTGCGCCGGAACAGTCGGAGATCAAACGTCTCTCTCAGAAAGC 1700
Query 1617 TGACGTGTACAGCTTCGGTGTGTTGCTTCTCGAGGTTTTAACAGGAAAAGCTCCCTCGAT 1676
|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1701 TGACGTGTACAGTTTTGGTGTGTTGCTTCTCGAGGTTTTAACAGGAAAAGCACCCTCGAT 1760
Query 1677 ATTCCCGTCTCCTTCGAGACCTAGATCGGCGGCGTCGGTGGCGGTGGAGGAGGAGGAAGA 1736
|||||||||||| || ||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 1761 ATTCCCGTCTCCGTCTAGACCTAGATCAGCGGCGTCGGTGGCTGTGGAGGAAGAGGAAGA 1820
Query 1737 AGCGGTGGTTGATTTACCGAAGTGGGTTAGATCGGTGGTGAAGGAGGAATGGACGGCGGA 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1821 AGCGGTGGTTGATTTACCGAAGTGGGTTAGATCGGTGGTGAAGGAGGAATGGACGGCAGA 1880
Query 1797 GGTTTTTGATCCGGAGCTTTTGAGGTATAAGAATATTGAGGAGGAGATGGTGGCGATGCT 1856
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1881 GGTTTTTGATCCGGAGCTTTTGAGGTATAAGAACATAGAGGAGGAGATGGTGGCAATGCT 1940
Query 1857 TCATATCGGTTTAGCTTGCGTCGTGCCGCAGCCGGAGAAGAGGCCGACGATGGCGGAGGT 1916
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1941 TCATATCGGTTTAGCTTGCGTTGTGCCTCAGCCGGAGAAGAGGCCGACGATGGCGGAAGT 2000
Query 1917 TGTTAAGATGGTTGAGGAGATTAGAGTTGAGCAATCTCCGGTTGGTGAGGATTTTGATGA 1976
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2001 TGTTAAGATGGTTGAGGAGATTAGAGTTGAGCAATCTCCGGTCGGTGAGGATTTTGATGA 2060
Query 1977 GTCAAGGAACTCAATGTCGCCGTCGTTGGCTACCACCGA 2015
|||| | ||||||||||| ||||||||||||||||||||
Sbjct 2061 GTCACGAAACTCAATGTCTCCGTCGTTGGCTACCACCGA 2099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100350889455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5