BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321374
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36690.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1190 0.0
AT2G06960.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 425 4e-118
> AT2G36690.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr2:15379694-15381987
FORWARD LENGTH=1218
Length=1218
Score = 1190 bits (644), Expect = 0.0
Identities = 765/824 (93%), Gaps = 5/824 (1%)
Strand=Plus/Plus
Query 352 CAGGTTGTGAATCATGGGATGGAGGGAGATGTGAGCAAGAACATGATAGAAGTGTGTAAG 411
||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||
Sbjct 391 CAGGTTGTGAATCATGGGATGGAAGGAGACGTGAGCAAGAATATGATAGACGTGTGTAAG 450
Query 412 AGATTCTTTGAGCTTCCGTACGAGGAGAGATCAAAGTACATGTCGTCGGACATGTCGGCT 471
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 451 AGATTCTTTGAGCTTCCGTACGAGGAGAGATCCAAGTACATGTCGTCGGACATGTCGGCT 510
Query 472 CCAGTACGATACGGCACGAGTTTCAACCAGATCAAAGACAATGTATTTTGTTGGAGAGAC 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 511 CCAGTACGATACGGCACGAGTTTCAACCAGATCAAAGACAATGTCTTTTGTTGGAGAGAC 570
Query 532 TTCTTGAAACTCTATGCACATCCTCTCCCTGAATATCTTCCTCATTGGCCTTCTTCTCCT 591
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 571 TTCTTGAAACTCTATGCACATCCACTCCCTGACTATCTTCCTCATTGGCCTTCTTCTCCT 630
Query 592 TCCGACTTCAGGAGTTTGGCGGCTACCTACGCTAAAGAGACGAAAGAGATGTTCGAGATG 651
|| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 631 TCTGACTTCAGGAGTTCGGCGGCTACATACGCTAAAGAGACGAAAGAGATGTTCGAAATG 690
Query 652 ATGGTCAAAGCCATCTTAGAGAGTCTTGAAATTGATGGCGGCGACGAGGCGGCTGAGGAG 711
|||||||||||||||||||| |||||||||||||||||| | || ||||||||| |||||
Sbjct 691 ATGGTCAAAGCCATCTTAGAAAGTCTTGAAATTGATGGCAGTGATGAGGCGGCTAAGGAG 750
Query 712 TTGGAAGAGGGAAGTCAGGTGGTGGTGGTGAACTGTTATCCGCCGTGTCCGGAGCCGGAG 771
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 751 TTGGAAGAGGGAAGTCAGGTGGTGGTGGTGAACTGTTATCCACCGTGTCCGGAGCCAGAG 810
Query 772 CTGACGCTAGGGATGCCACCGCACTCCGACTACGGCTTCTTGACGCTTCTCCTTCAAGAC 831
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 811 CTGACGCTAGGGATGCCACCGCACTCAGACTACGGCTTCTTGACGCTTCTACTTCAAGAC 870
Query 832 GACGTTGAAGGCCTTCAGATTCTGTACCGTGACGAGTGGGTCACCGTTGATCCCATCCCT 891
|| || ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 871 GAAGTCGAAGGTCTTCAAATTCTGTATCGTGACGAGTGGGTCACCGTTGATCCCATCCCT 930
Query 892 GGCTCTTTTGTCGTCAACGTCGGTGATCATCTCGAGATATTTAGCAATGGGAGATATAAA 951
||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 931 GGCTCTTTTGTTGTCAACGTAGGCGATCATCTCGAGATATTTAGCAATGGGAGGTATAAA 990
Query 952 AGCGTGCTACATAGAGTATTGGTGAATTCCACAAAGCCTAGGATATCAGTGGCGTCGCTG 1011
|||||||||||||| ||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 991 AGCGTGCTACATAGGGTATTGGTGAACTCTACAAAACCTAGGATATCGGTGGCGTCGCTA 1050
Query 1012 CACAGCTTCCCCTTGACCTCCGTCGTGAAA-CCATCACCGAAGCTCGTCGATGAACATAA 1070
||||||||||| ||||| || ||||| ||| ||||| ||||| ||||||||| |||||||
Sbjct 1051 CACAGCTTCCCTTTGACTTCTGTCGT-AAAGCCATCGCCGAAACTCGTCGATAAACATAA 1109
Query 1071 TCCACCTCAATATATGGACACTGATTTTACCACTTTTCTTC-GATATGTTTCCTCTCGCG 1129
|||| | || ||||||||||||||||||||||||||||||| | ||| | | ||||| |
Sbjct 1110 TCCATCACAGTATATGGACACTGATTTTACCACTTTTCTTCAG-TATATAACTTCTCGTG 1168
Query 1130 AACCTAAGTGGAAGAATTTTCTGGAATCACGCAAAAT-CACCAT 1172
|||| || |||||||||||||| ||||||||||| || ||||||
Sbjct 1169 AACCCAAATGGAAGAATTTTCTTGAATCACGCAAGATTCACCAT 1212
Score = 429 bits (232), Expect = 3e-119
Identities = 265/281 (94%), Gaps = 2/281 (1%)
Strand=Plus/Plus
Query 1 ATGTCGCCGTCAATGATAGCTCCGGTGATGGAAGAAGAGAACAAGAAATATCAAAAAGGT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 118 ATGTCGCCGTCAATGATAGCTCCGGTGATGGAAGAAGAGAACAAGAAATACCAAAAAGGC 177
Query 61 GTGAAACATCTCTGTGACACTGGTCTGACCAAAGTACCAACTAAATATATATGGCCTGAA 120
||||||||||| ||||| | ||||||||||||||||||||| || |||||||||||||||
Sbjct 178 GTGAAACATCTTTGTGAAAATGGTCTGACCAAAGTACCAACCAAGTATATATGGCCTGAA 237
Query 121 CCTGACCGACCTATCTTTACAAAATCCGACAAGCTCATTAAACCAAAACAAAA-CCTAAA 179
||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| ||||||
Sbjct 238 CCTGACCGACCCATCTTGACAAAATCGGACAAGCTCATCAAACCAAA-CAAAAACCTAAA 296
Query 180 GCTTCCCCTCATAGATTTCGCTGAGCTCCTTGGACCTAACCGCCCTCATGTTCTACGAAC 239
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 297 GCTCCCCCTCATAGATTTCGCTGAGCTCCTTGGACCTAACCGGCCTCATGTTCTACGAAC 356
Query 240 CATAGCCGAGGCCTGCAAAACCTACGGCTTCTTCCAGGTTG 280
||||||||||||||||||||||||||||||||| |||||||
Sbjct 357 CATAGCCGAGGCCTGCAAAACCTACGGCTTCTTTCAGGTTG 397
> AT2G06960.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr2:2867672-2870352
REVERSE LENGTH=447
Length=447
Score = 425 bits (230), Expect = 4e-118
Identities = 408/486 (84%), Gaps = 44/486 (9%)
Strand=Plus/Plus
Query 652 ATGGTCAAAGCCATCTTAGAGAGTCTTGAAATTGATGGCGGCGACGAGGCGGCTGAGGAG 711
||||||||||||||||| || |||||||||||||||||||| || |||||||| ||||||
Sbjct 1 ATGGTCAAAGCCATCTTCGAAAGTCTTGAAATTGATGGCGGTGATGAGGCGGCGGAGGAG 60
Query 712 TTGGAAGAGGGAAGTCAGGTGGTGGTGGTGAACTGTTATCCGCCGTGTCCGGAGCCGGAG 771
|||||| |||||||||| || |||||||||||||||||||| |||||||||||||| |
Sbjct 61 TTGGAAAAGGGAAGTCAAGTAGTGGTGGTGAACTGTTATCCACCGTGTCCGGAGCC--A- 117
Query 772 CTGACGCTAGGGATGCCACCGCACTCCGACTACGGCTTCTTGACGCTTCTCCTTCAAGAC 831
|| || || | ||| ||| |||||||||||||||| |||||||||||||||
Sbjct 118 --GA-GC------TG--A-CGCCCTCAAACTACGGCTTCTTGACTCTTCTCCTTCAAGAC 165
Query 832 GACGTTGAAGGCCTTCAGATTCTGTACCGTGACGAGTGGGTCACCGTTGATCCCATCCCT 891
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 166 GACGTCGAAGGCCTTCAGATTCTATACCGTGACGAGTGGGTCACCGTTGATCCCATTCCT 225
Query 892 GGCTCTTTTGTCGTCAACGTCGGTGATCATCTCGAGATATTTAGCAATGGGAGATATAAA 951
||||||||||||||||| | | |||||||||||| || | || | || |
Sbjct 226 GGCTCTTTTGTCGTCAA-G-C---GATCATCTCGAGGTA--T----AT--TA-AT-T--- 267
Query 952 AGCGTGCTACATAGAGTATTGGTGAATTCCACAAAGCCTAGGATATCAGTGGCGTCGCTG 1011
| | || ||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 268 ----T--T---TATAGTATTGGTGAATTCCACAAAGCCTAGGAGATCAGTGGCGTCGATG 318
Query 1012 CACAGCTTCCCCTTGACCTCCGTCGTGAAACCATCACCGAAGCTCGTCGATGAACATAAT 1071
|| ||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 319 CAAAGCTTTCCCTTGATATCCGTCGTGAAGCCATCACCAAAGCTCGTCGATGAACATAAT 378
Query 1072 CCACCTCAATATATGGACACTGATTTTACCACTTTTCTTCGA-TATGTTTCCTCTCGCGA 1130
||||| |||||||||||||| || ||| |||||||||| || || |||| |||||||||
Sbjct 379 CCACCACAATATATGGACACCGAGTTTGCCACTTTTCTA-GAATACGTTTTCTCTCGCGA 437
Query 1131 ACCTAA 1136
||||||
Sbjct 438 ACCTAA 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57730626750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5