BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321384
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36810.1 | Symbols: | ARM repeat superfamily protein | chr2... 1051 0.0
> AT2G36810.1 | Symbols: | ARM repeat superfamily protein | chr2:15425479-15439462
REVERSE LENGTH=5411
Length=5411
Score = 1051 bits (569), Expect = 0.0
Identities = 603/620 (97%), Gaps = 0/620 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCTCTTAGAGATATTGCCTCGCTGAATCCGCTTCTGGTTCTTGATTGTTGCTAT 60
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 103 ATGGCTTCTCTTAGAGATATTGCCTCCCTGAATCCGCTTCTGGTACTTGATTGTTGCTAT 162
Query 61 GCTGTGTCTCGTGGAGGACGCAGGCGGTTTGGTAACATGGCTGGGGTTTTTCAAGTAATG 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 163 GCTGTGTCTCGTGGAGGACGAAGGCGGTTTGGTAACATGGCTGGGGTTTTTCAAGTAATG 222
Query 121 GCATTTAGTGTCGGTGCGTTAGAGAAAGGGGAGAGTGATGCAGTTTTCATGGGAAAGCTT 180
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 223 GCATTTAGTGTTGGTGCGTTAGAGAAAGGGGAGAGTGATTCAGTTTTCATGGGAAAGCTT 282
Query 181 GCTAAGATTGCTACAGCTGAGATAATATCTTCCAAGGAACTAAATGCTGATTGGCAAAGG 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 283 GCTAAGATTGCTACAGCTGAGATTATATCTTCCAAGGAACTAAATGCTGATTGGCAAAGG 342
Query 241 CAAGCGTCAATGCTGCTCGTCTCAATTGGAACACATTTTCCTGATCTTATGATGGAAGAA 300
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CAAGCATCAGGGCTGCTCGTCTCAATTGGAACACATTTTCCTGATCTTATGATGGAAGAA 402
Query 301 ATATTTCTTCATCTGTCTGGTCCGGCTACAGCTGCACCTGCTATGGTTCAAATACTTGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 ATATTTCTTCATCTGTCTGGTCCGGCTACAGCTGCACCTGCTATGGTTCAAATACTTGCT 462
Query 361 GACTTTGCTTCATCTGATGCTTTGCAGTTCACTCCACGCCTGAAAGGTGTACTTTCAAGG 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 463 GACTTTGCCTCATCTGATGCTTTGCAGTTCACTCCACGCCTGAAAGGTGTACTTTCAAAG 522
Query 421 GTGTCGCCTATTCTTGGGAATGTTCGGGACGTACACCGACCAATATTTGCAAATGCATTT 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 523 GTGTCGCCTATTCTTGGGAATGTTCGGGACATACACCGACCAATATTTGCAAATGCATTT 582
Query 481 AAGTGCTGGTCTCAGGCAGCGTGGCTATACATCACAGATCTTACCTCAGATTCTCCGCTT 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 583 AAGTGCTGGTCTCAGGCAGTGTGGCTATACATCACAGATCTTACCTCAGATTCTCCGCTT 642
Query 541 GACAGTGATGTCATGTCAAATCTGAATTCAGTTTTTGAGCTATTGTTGAGAGTTTGGGCA 600
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GACAGTGATGTCATGTCATTTCTGAATTCAGTTTTTGAGCTATTGTTGAGAGTTTGGGCA 702
Query 601 ATTTCTCGAGATCATAAGGT 620
|||| ||||||||||||||
Sbjct 703 GTTTCCCGAGATCATAAGGT 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5