BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321394

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36895.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   590    6e-168


> AT2G36895.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; Has 32 Blast hits to 32 proteins 
in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr2:15489029-15490328 REVERSE LENGTH=878
Length=878

 Score =  590 bits (319),  Expect = 6e-168
 Identities = 354/371 (95%), Gaps = 2/371 (1%)
 Strand=Plus/Plus

Query  240  ATCACCAGAAAAACATCAAAAGTTTCAAGAAAGTTCCTACATGGATCCCGCTCAAGGTCT  299
            ||||| ||||||||||||||||||||| |||||| | ||||||||||| |||||||||||
Sbjct  362  ATCACTAGAAAAACATCAAAAGTTTCATGAAAGTGCTTACATGGATCCTGCTCAAGGTCT  421

Query  300  ATGTCTTGGAGCTCT-TTTCGACATCGCAGCTACAAACGGACTGGATATGGGAAGAAGAC  358
            ||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct  422  ATGTCTTGGAGCTCTCTTT-GACATCGCAGCGACAAATGGACTGGATATGGGAAGAAGAC  480

Query  359  TATGTATCTTTGGATTCTGCCGTTCTGTTGAGATGCTTAGTGATGTTGTTGAAGACACTG  418
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct  481  TATGTATCTTTGGATTCTGTCGTTCTGTTGAGATGCTTAGTGATGTTGTTGAAGATACTG  540

Query  419  TCTTAGAACATGGTGGAGAGATTGTAGCTACAGAGACAGAGAGCACAAGCGGTTTACAAG  478
            |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct  541  TCTTAGAACACGGTGGAGAGATTGTTGCTACAGAGACAGAGAGCACAAGTGGTTTACAAG  600

Query  479  AGAAGCTAACGATGACAGTGGCGGTTCCATATCTCTGGGGGGTTCCTCCGGCTGCAGAAA  538
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  601  AGAAGCTAACGATGACAGTTGCGGTTCCATATCTCTGGGGGGTTCCTCCGGCTGCAGAAA  660

Query  539  GGCTTCATCTTGCGGTTCGAACCGGTGGAGGCATCGTAGACAAAGTTTATTGGCAATGGC  598
            ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  GGCTTCACCTTGCAGTTCGAACCGGTGGAGGCATCGTAGACAAAGTTTATTGGCAATGGC  720

Query  599  ATTTCTTGTGA  609
            |||||||||||
Sbjct  721  ATTTCTTGTGA  731


 Score =  220 bits (119),  Expect = 1e-56
 Identities = 140/150 (93%), Gaps = 2/150 (1%)
 Strand=Plus/Plus

Query  1    ATGGCGGAGACTTGTACGCTACTCTTCTCTACCTTCTCCTCTCACCTCACGATCTCCCCT  60
            ||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  33   ATGGCAGAGACTTCTACGCTTCTCTTCTCTACCTTCTCCTCTCACCTCACGATCTCTCCT  92

Query  61   TTTCGCCACTCTCATCCCTCCGCCGCTCGATTCCCATCTCTTCTTTCCCGCGTTCGGCCA  120
            |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  93   TTTCGCCAATCTCATCCCTCCGCCGCTCGATTCTCATCTCTTCTTTCCCGCGTTCGGCCA  152

Query  121  TCTCGATTCGCCGT-AAAGGCATCACATTA  149
            || |||||||| || |||| ||||||||||
Sbjct  153  TCACGATTCGCGGTTAAAG-CATCACATTA  181



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5