BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321431

Length=699
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G37240.1 | Symbols:  | Thioredoxin superfamily protein | chr...  58.4    9e-08


> AT2G37240.1 | Symbols:  | Thioredoxin superfamily protein | chr2:15639939-15641763 
REVERSE LENGTH=1086
Length=1086

 Score = 58.4 bits (31),  Expect = 9e-08
 Identities = 38/41 (93%), Gaps = 1/41 (2%)
 Strand=Plus/Minus

Query  659   GCAAGGTCCGCCACTTATCCTTCGCTGATCTCGACTCATAA  699
             |||||| ||  ||||||||||||||||||||||||||||||
Sbjct  1035  GCAAGGGCC-ACACTTATCCTTCGCTGATCTCGACTCATAA  996



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33857815078


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5