BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321443
Length=2028
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37370.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3275 0.0
> AT2G37370.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G13560.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr2:15679115-15683217 FORWARD LENGTH=2339
Length=2339
Score = 3275 bits (1773), Expect = 0.0
Identities = 1948/2030 (96%), Gaps = 22/2030 (1%)
Strand=Plus/Plus
Query 1 ATGTCGTGGTTGAGATCGGCGGTGAACAAAGCAGTAGAAGTCGGCGGGAAGAACAATATC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 159 ATGTCGTGGTTGAGATCGGCGGTGAACAAAGCAGTTGAAGTCGGCGGGAAGAACAATATC 218
Query 61 ACCCGCACCGTTCGCAATTACGCTGATTCCGTCGTGCTTACCGCCGGCAATGCCGTTTCC 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 219 ACCCGCACCGTTCGCAATTACGCTGATTCCGTCGTCCTTACCGCCGGCAATGCCGTTTCC 278
Query 121 GAAGGCGCCAAACTCATCCAGGATCGCATCGGATCGAGGAATGTGAAGAGCTTTAGTCTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GAAGGCGCCAAACTCATCCAGGATCGCATCGGATCGAGGAATGTGAAGAGCTTTAGTCTC 338
Query 181 GCGGTGAAGAGATTAGAAGAGGTTTCGGTTTCTTCGAGAGGCGGCGAGAGAGTGCAGTTG 240
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 339 GCGGTGAAGAGATTAGAAGAGGTTTCGGTTTCTTCAAGAGGAAGCGAGAGAGTGCAGTTG 398
Query 241 TTGAGAAGATGGCTTGTTGCTTTGAAAGAGATTGAGAGAATGTCTTATTCTTGTTTCGAC 300
||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 399 TTGAGGAGATGGCTTGTTGCTTTGAGAGAGATTGAGAGGATGTCTTATTCTTGTTTCGAC 458
Query 301 AATAACAATCACAAAACCGATGATCATAATCAACCTTATTCAGAAGAAGCTAAAGATTCT 360
|||||||||||||||||||||||||||| || | | || | ||||||||
Sbjct 459 AATAACAATCACAAAACCGATGATCATACTC-A----A-TC--------C-GAAGATTCT 503
Query 361 CCTAAAAACTTCAGCACCGTTTATTACGTTGATCCTGGTCTTCCCGGTGAGCCAATGACT 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CCTAAAAACTTCAGTACCGTTTATTACGTTGATCCTGGTCTTCCCGGTGAGCCAATGACT 563
Query 421 TTCCGCGATGTGTTTCTTCATAGCGAGGCGCTTGAAGGGATGGTGTTGTCTATGATTTTG 480
|| || ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 564 TTTCGTGATGTGTTTCTTCATAGTGAGGCACTTGAAGGGATGGTCTTGTCTATGATTTTG 623
Query 481 GAAGCACCCAATGAGGAAGAAGTCCAGCTGCTTTTGGAACTGTTTGGGCTCTGTTTGTCA 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 624 GAAGCACCCAATGAGGAAGAAGTCCAGCTGCTTTTGGAACTATTTGGGCTCTGTTTGTCA 683
Query 541 GGAGAGAAGGAAGTTCATGAAGCAGTGATTCAAAATGTGCAGGACTTAGCAA-TGGTGTT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 684 GGAGAGAAGGAAGTTCATGAAGCAGTGATTCAAAATGTGCAGGACTTAGCAACT-GTGTT 742
Query 600 TTCGAAATACAAGGATGAAGTTCTGGCAAAGCGCGAGGAACTGCTTCAATATGTCCAAGG 659
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 TTTGAAATACAAAGATGAAGTTCTGGCAAAGCGCGAGGAACTGCTTCAATATGTCCAAGG 802
Query 660 TGCTATTGGAGGGTTAAAAATCAGTGCTGATCTTGCAAGAATAGATATTGAAGCCCATAG 719
||||||||||||||||||| | ||||||||| |||||||||||||||||||||| ||||
Sbjct 803 TGCTATTGGAGGGTTAAAATTGAGTGCTGATATTGCAAGAATAGATATTGAAGCACATAC 862
Query 720 TCTGATGGAGAAACTCGATAAGACAAAAGTCAAGGTTCTCGAGCATGCTTCAAATGAAGA 779
||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 863 TCTGATGGAGAAACTAGATAAGACTAAGGTCAAGGTTCTCGAGCATGCTTCAAGTGAAGA 922
Query 780 TGCTTCAAAAACTGCTGCATCAACAGAGGCTCTCCGGGAAATTCTTGAGCAAGTTCGCAC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TGCTTCAAAAACTGCTGCATCAACAGAGGCTCTCCGGGAAATTCTTGAGCAAGTTCGCAC 982
Query 840 TTTTTCAAAACTAGAAGCACTCTTGCTTAGGAAAAAATCATTACGCAATGGTGATTCCCT 899
||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 983 TTTTTCAAAGCTAGAAGCACTCTTGCTTAGGAAAAAATCATTACACAATGGTGATACCCT 1042
Query 900 TCAACGCCACAGTGAGAAGGTCGATAAACTGAAAGTTCTGTCAGAATCCTTACTCAATTC 959
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1043 TCAACGCCACATTGAGAAGGTCGATAAACTGAAAGTTCTATCAGAATCCTTACTCAATTC 1102
Query 960 TACCTCGAAAGCCGAAAAGCGAAT-AGTGGATCATAGCAGAAGCCAAAAAGAAGAAGCTC 1018
||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 1103 CACCTCGAAAGCCGAAAAGCGAATCA-TGGATCAT---AGAAGCCAAAAAGAAGAAGCTC 1158
Query 1019 TAAGCTACCGAGTTTCTAAAACTACTGAAGTTGGTCAGCTGGAGAAGGATGTAGCTGCAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 TAAGCTACCGAGTTTCTAAAACTACTGAAGTTGGTCAGCTGGAGAAGGATGTAGCTGCAG 1218
Query 1079 AATTaaaaaaaCTTGAGATTTTGAAGGATGATCTTGAAGCTGAGCTGAAAAGGGTCAACA 1138
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1219 AATTAAAAAAACTTGAGATTTTGAAGGAAGATCTTGAAGCTGAGCTGAAAAGGGTCAACA 1278
Query 1139 CCTCAATAACATCTGCCCGGGCTCGCCTTCGCAATGCCCAAGAAGAAAGAGAGCAGTTCG 1198
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1279 CCTCAATAACATCTGCCCGGGCTCGCCTTCGCAATGCTCAAGAAGAAAGAGAGCAGTTTG 1338
Query 1199 ATAATGCGAGTAACGAAATTCTTATGCACCTGAAGTCAAAGGAAGAAGAGCTGACTCGTT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 ATAATGCGAGTAACGAAATTCTTATGCACCTGAAGTCAAAGGAAGAAGAGCTGACTCGTT 1398
Query 1259 CGATAACTTCATGCCGAGTAGAGGCAGATGTTGTAAATAAGTGGATCAAATTTTTGGAAG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 CGATAACTTCATGCCGAGTAGAGGCAGATGTTGTAAATAAGTGGATCAAATTTTTGGAAG 1458
Query 1319 ATACCTGGATTCTCCAGTCTAAATTTTCTCAACAAAAGGAAAACCAAGTGAGTGGTGAGA 1378
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1459 ATACATGGATTCTCCAGTCTAAATTTTCTCAACAAAAGGATAACCAAGTTAGTGGTGAGA 1518
Query 1379 TGGAGAGATATAGTGACCATTTCATCGACCTGATTGTTCAACTCCTATCTTTCTACAAGG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 TGGAGAGATATAGTGACCATTTCATCGACCTGATTGTTCAACTCCTATCTTTCTACAAGG 1578
Query 1439 AACAATTGGATCCATATATACCGAAAATCCGAGGAGTCGTGGAAAGTTTGGAACCAAGTA 1498
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1579 AACAATTGGATCCATATATACCGAAAATCCGAGGAGTCGTGGCAAGTTTGGAACCAAGTA 1638
Query 1499 AAGGGTTAGAAGCAGAGAAAATCACAGACAACAAGGATACAAAGCCATTTGATTCTAGAA 1558
||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1639 AAGGGTTAGAAGCCGAGAAAATCATAGACAACAAGGATACAAAGCCATTTGAATCTAGAA 1698
Query 1559 AACAGCTTGAGAAGGAGTATCTGGACCTCGAAGCTAAGTTTGTAACAACATTAAGTGTGG 1618
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1699 AACAGCTTGAGAAGGAGTATTTGGACCTCGAAGCTAAGTTTGTAACAACATTAAGTGTGG 1758
Query 1619 TGGATGCGATGAAAAAGCCATTCTATTCACAAACAGAAGGTATCTCCAGGAAAGACGATA 1678
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1759 TGGATGCAATGAAAAAGCCATTCTATTCACAAACAGAAGGAATCTCCAGGAAAGACGATA 1818
Query 1679 AAAGAGTGAAAGAACTATTTGAGGTATTGGACAAAACAAAACAAGAGTTTGAGGCTATCG 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819 AAAGAGTGAAAGAACTATTTGAGGTATTGGACAAAACAAAACAAGAGTTTGAGGCTATCG 1878
Query 1739 AACGCCCGCTTTTGGATATTGAGTCTCCTTCTAGAACCTCATCATCTTCACGCTCACCGT 1798
||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1879 AACGCCCGCTTCTAGATATTGAGTCTCCTTCTAGAACCTCATCGTCTTCACGCTCACCGT 1938
Query 1799 CCCTGAAAATGACGCATGAGACTCCACTTACCGATACAGTCCTGAAACTTTCCGGTAATG 1858
|| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1939 CCTTGAAAATGACTCATGAGACTCCACTTTCCGATACAGTCCTGAAACTTTCCGGTGGTG 1998
Query 1859 ATGATTCACCAGACAGTAAAAAAGGGTCTTCAGAGAAGGAAGAAGACCCGGCAAAGAAAC 1918
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1999 ATGATTCACCAGACAGTAAAAAAGGGTCTTCAGGGAAGGAAGAAGACCCGGCAAAGAAAC 2058
Query 1919 AACTGGAGTTGGAACTGGACGTCGACGGAGAAGAGTTCTTGGCAGATGAAATCAATGACT 1978
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2059 AACTCGAGTTGGAACTGGACGTCGACGGAGAAGAGTTCTTGGCAGATGAAATCAATGACT 2118
Query 1979 GGGAATTCGACGCTCTTGATGAAACTCTCACCTCAAAAACCAGTAGTTGA 2028
|||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 2119 GGGAATTCGACGCTCTTGATGAAACTCTGACCTCAAAGACAAGTAGTTGA 2168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100501491090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5