BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321463
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37630.1 | Symbols: ATPHAN, AS1, ATMYB91, MYB91 | myb-like H... 1853 0.0
> AT2G37630.1 | Symbols: ATPHAN, AS1, ATMYB91, MYB91 | myb-like
HTH transcriptional regulator family protein | chr2:15781615-15783433
REVERSE LENGTH=1490
Length=1490
Score = 1853 bits (1003), Expect = 0.0
Identities = 1073/1107 (97%), Gaps = 3/1107 (0%)
Strand=Plus/Plus
Query 1 ATGAAAGAGAGACAACGTTGGAGTGGTGAAGAAGATGCATTGTTACGTGCGTACGTTAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 204 ATGAAAGAGAGACAACGTTGGAGTGGTGAAGAAGATGCATTGTTACGTGCTTACGTTAGA 263
Query 61 CAGTTCGGTCCGAGAGAATGGCATCTTGTGTCTGAGCGTATGAACAAACCTTTGAACCGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 CAGTTCGGTCCGAGAGAATGGCATCTTGTGTCTGAGCGTATGAACAAACCTTTGAACCGT 323
Query 121 GACGCCAAGTCTTGTTTAGAGAGATGGAAGAATTATCTTAAACCAGGGATCAAGAAAGGT 180
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 324 GACGCCAAGTCTTGTTTAGAGAGATGGAAGAATTATCTTAAGCCAGGGATCAAGAAAGGG 383
Query 181 TCTTTGACTGAGGAAGAGCAGAGGCTTGTGATCCGTCTTCAGGAGAAACACGGCAACAAG 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TCTTTGACAGAGGAAGAGCAGAGGCTTGTGATCCGTCTTCAGGAGAAACACGGCAACAAG 443
Query 241 TGGAAGAAGATTGCTGCTGAGGTTCCCGGGAGGACGGCCAAGCGGTTAGGGAAGTGGTGG 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 444 TGGAAGAAGATTGCTGCTGAGGTTCCCGGGAGGACGGCAAAGCGGTTAGGGAAGTGGTGG 503
Query 301 GAAGTGTTTAAGgagaagcaacagagagaagagaaagagagtaacaagagagTTGAGCCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GAAGTGTTTAAGGAGAAGCAACAGAGAGAAGAGAAAGAGAGTAACAAGAGAGTTGAGCCT 563
Query 361 ATTGACGAGAGTAAGTACGATCGGATTCTCGAGAGTTTTGCTGAGAAGCTTGTCAAAGAG 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 564 ATTGACGAGAGTAAGTACGATCGGATTCTCGAGAGTTTCGCTGAGAAGCTTGTCAAAGAG 623
Query 421 CGGTCTAACGTTGTTCctgctgctgctgccgctgctgcCACGGTTGTGATGGCTAATTCG 480
|||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||
Sbjct 624 CGGTCTAACGTTGT-CC--CTGCTGCTGCCGCTGCTGCAACGGTTGTGATGGCTAATTCG 680
Query 481 AATGGAGGGTTTTTACATTCTGAACAACAAGTTCAGCCTCCTAACCCGGTGATCCCGCCT 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 681 AATGGAGGGTTTTTACATTCTGAACAACAAGTTCAGCCTCCTAACCCAGTGATCCCGCCT 740
Query 541 TGGTTAGCTACTTCTAATAATGGGAACAATGTTGTTGCCAGGCCTCCCTCGGTGACTTTA 600
||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 741 TGGTTAGCTACTTCTAACAATGGGAACAATGTTGTTGCAAGGCCTCCCTCGGTAACTTTG 800
Query 601 ACATTATCGCCCTCCACCGTGGCTGCAGCTGCGCCTCAACCGCCAATCCCGTGGCTGCAG 660
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 ACATTATCGCCTTCCACAGTGGCTGCAGCTGCGCCTCAACCGCCAATCCCGTGGCTGCAG 860
Query 661 CAGCAACAGCCCGAGAGAGCAGAGAGCGGTCCTGGGGGACTTGTGTTAGGGAGTATGATG 720
||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 861 CAGCAACAGCCTGAGAGAGCAGAGAACGGTCCAGGGGGACTTGTGTTAGGGAGTATGATG 920
Query 721 CCGTCTTGTAGTGGGAGTAGCGAGAGTGTGTTCTTGTCAGAACTAGTGGAATGTTGTAGA 780
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 921 CCGTCTTGTAGTGGGAGTAGCGAGAGTGTGTTCTTGTCAGAGCTTGTGGAGTGTTGTAGA 980
Query 781 GAGTTGGAGGAAGGGCATAGAGCTTGGGCGGACCATAAGAAAGAGGCTGCATGGAGGCTA 840
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 981 GAGTTGGAGGAAGGGCACCGAGCTTGGGCAGACCATAAGAAAGAGGCTGCATGGAGGCTA 1040
Query 841 AGGAGACTGGAGCTGCAGCTAGAGTCAGAGAAGACGTGTAGACAAAGGGAGAAGATGGAG 900
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 AGAAGGCTGGAGCTGCAGCTAGAGTCAGAGAAGACGTGTAGACAAAGGGAGAAGATGGAG 1100
Query 901 GAGATTGAGGCAAAGATGAAAGCTCTTAGGGAAGAGCAAAAGAGCGCAATGGAGAAGATT 960
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1101 GAGATTGAGGCAAAGATGAAAGCTCTTAGGGAAGAGCAGAAGAACGCAATGGAGAAGATC 1160
Query 961 GAAGGAGAGTACAGAGAACAGCTCGTTGGTTTGAGGCGAGACGCCGAGGCCAAAGACCAG 1020
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1161 GAAGGAGAGTACAGAGAACAGCTCGTTGGTTTGAGGCGAGACGCAGAGGCCAAAGACCAG 1220
Query 1021 AAACTGGCTGATCAATGGACCTCTAAGCATATCAGACTCACCAAGTTTCTTGAACAACAC 1080
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1221 AAACTGGCTGATCAATGGACCTCTAGGCATATCAGACTCACCAAGTTTCTTGAACAACAA 1280
Query 1081 ATGGGTTGCAGATTAGACCGCCCCTGA 1107
|||||||||||||||||||||||||||
Sbjct 1281 ATGGGTTGCAGATTAGACCGCCCCTGA 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5