BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321495
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37920.1 | Symbols: emb1513 | copper ion transmembrane trans... 1013 0.0
AT2G37925.1 | Symbols: COPT4 | copper transporter 4 | chr2:1587... 580 8e-165
> AT2G37920.1 | Symbols: emb1513 | copper ion transmembrane transporters
| chr2:15868580-15870071 REVERSE LENGTH=1398
Length=1398
Score = 1013 bits (548), Expect = 0.0
Identities = 719/794 (91%), Gaps = 42/794 (5%)
Strand=Plus/Plus
Query 404 CTCCAATGGCGGCGACGATGATCGGATTTAACCTCTCCTGCTTCAAATCAACATCGTtct 463
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 43 CTCCAATGGCGGCGACGATGATCGGAATTAACCTCTCCTGCTTCAAATCAACATCGTTCT 102
Query 464 tctcaccggacctcaattctctccactcaaagctctctctcctatctctcaAACCCTATC 523
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 103 TCTCACCGGACCTCAATTCTCTCCAATCAAAGCTCTCTCTCCTATCTCTCAAACCCTCTC 162
Query 524 C-ACA-A-CCACGAAAATCAACAGTTATCCGTATGGGCGGTGGTCCGAGAACATTCCCCG 580
| ||| | ||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 163 CAACACAGCCACGGAAATCAACAGTCATCCGTATGGGCGGTGGTCCGAGAACTTTCCCCG 222
Query 581 GCGGTGTCTCAAAATGGCAGTGGAAAAGGATGCAAGCGAAGAAACAGAAACAGCTTCTCA 640
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GCGGTGTATCAAAATGGCAATGGAAAAGGATGCAAGCGAAGAAACAGAAACAGCTTCTCA 282
Query 641 AAGCGAGGTTATGCAGAGAACGTCAGATCTACGAGATGAGAAAACGCGCAGAGCTAAAAG 700
|||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 283 AAGCAAGGTTATGCAGAGAACGTCAGATCTACGAGATGCGAAAACGCGCCGAGCTAAAAG 342
Query 701 CGGCGGTGGCTGAGCTTGAACGACCATGGGAACCGATTCAGAAACCACCGAATCTATTCT 760
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 343 CGGCGGTGGCTGAGCTAGAACGACCATGGGAACCGATTCATAAACCACCGAATCTATTCT 402
Query 761 CTGTTTGTGCTGATGAACAAGTTAAGGTGCTCGCGGATCGGTTTCAGAAACCTGGTGGAT 820
| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 403 CAGTTTGTGCTGATGAGCAAGTTAAAGTACTCGCGGATCGGTTTCAGAAACCTGGTGGAT 462
Query 821 TTGATTTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCCTT 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 TTGATTTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCCTT 522
Query 881 CTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTCAAACCTTATGGTAGATTATCAT 940
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 523 CTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTTAAACCTTATGGTAGATTATCAT 582
Query 941 CAACCTCTGTTGATGATGGTGATTCTGATGGTAAAGAGAGTGAGGTGAAAGATGAAGAAA 1000
| | |||||||| | || || |||||| | ||||||||||| |||||||||||||
Sbjct 583 CTAGCTCTGTTG-T--TG---AT---GATGGTGATGAGAGTGAGGTTAAAGATGAAGAAA 633
Query 1001 TTGGGAAGAAGCTACGTGGTCGTAGGGTGAGAAAGAGAGTTGGTATCAGGGGGATAGAGA 1060
||||||||||| ||||||||||||||||||| ||||||| | | | || ||
Sbjct 634 TTGGGAAGAAGTTACGTGGTCGTAGGGTGAGGAAGAGAG--G-T----G----AT-GA-- 679
Query 1061 GAGGTGAAGAAGGAGGTAAGAGGAGGATTGAGAATCGTGTTAATGGTGGGAGATTGAGAA 1120
|| || || ||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 680 ----TG--GA-GG---TAAGAGGAGGACTGAAAATCGTGGTAATGGTGGGAGATTGAGAA 729
Query 1121 ATGGAAAATCTTCT-C-----AGGTTTATGAAATGACTTTGCAGAATGATGGGAGATATG 1174
||||| |||||| | |||| ||||| ||||||||||||||||||||||||||||
Sbjct 730 ATGGAGGGTCTTCTTCTTCTCAGGTGTATGATATGACTTTGCAGAATGATGGGAGATATG 789
Query 1175 AAATTGGATCTTAG 1188
||||||||||||||
Sbjct 790 AAATTGGATCTTAG 803
> AT2G37925.1 | Symbols: COPT4 | copper transporter 4 | chr2:15870220-15870697
REVERSE LENGTH=478
Length=478
Score = 580 bits (314), Expect = 8e-165
Identities = 373/402 (93%), Gaps = 2/402 (0%)
Strand=Plus/Plus
Query 1 ATGTTGTCAAGCAAAAACGTCGTCGTAGTAGAGGCTTGGAACACCACCACCACAACGCAA 60
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3 ATGTTGTCGAGCAAAAACGTTGTCGTAGTAGAGGCTTGGAACACCACCACCACAACGCAA 62
Query 61 ACGCAAACGCCACATAGACCCTCACTGTTACATCCAACATTCTACTGGGGTTACAACTGC 120
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 63 ACGCAAACGCCACATAGACCGTCACTGTTACACCCAACATTCTATTGGGGTTACAACTGC 122
Query 121 CAAGTACTCTTCTCAGGATGGCCTGGTCCTGACCGTGGGATGTATGCTCTTGCACTTATC 180
||||| ||||||||||| ||||||||| ||||||||||||||||||| || |||||||||
Sbjct 123 CAAGTGCTCTTCTCAGGCTGGCCTGGTTCTGACCGTGGGATGTATGCACTCGCACTTATC 182
Query 181 TTCGTCTTCTTTTTGGCGTTCTTAGCCGAGTGGCTAGCTCGGTGCTCTGACGCATCCTCC 240
|||||||||||| ||||||||||||| |||||||| ||||||||||||||||| || |||
Sbjct 183 TTCGTCTTCTTTCTGGCGTTCTTAGCTGAGTGGCTTGCTCGGTGCTCTGACGCGTCATCC 242
Query 241 ACCAAACCGGGTGCAGATAAACTTGCTAAAGTTGCGTTTCGCACGGCTATGTATGCCGTC 300
| ||||| |||||| ||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 243 ATCAAACAGGGTGCCGATAAGCTTGCTAAAGTTGCATTTCGCACGGCTATGTATACCGTC 302
Query 301 AAGTCCGGCTTTAGCTACCTTGTGAT-CTTGGCCGTTGTTTCTTTCAATGGTGGGGTTTT 359
|||||||||||||||||||| ||||| || ||| |||||||| ||||| ||||| |||||
Sbjct 303 AAGTCCGGCTTTAGCTACCTAGTGATTCT-GGCTGTTGTTTCCTTCAACGGTGGTGTTTT 361
Query 360 CCTAGCCGCGATTTTCGGGCATGCTCTTGGGTTCGCCGTTTT 401
|||||||||||||||||||||||||||||||||||| |||||
Sbjct 362 CCTAGCCGCGATTTTCGGGCATGCTCTTGGGTTCGCTGTTTT 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5