BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321514
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38100.1 | Symbols: | proton-dependent oligopeptide transpo... 2405 0.0
> AT2G38100.1 | Symbols: | proton-dependent oligopeptide transport
(POT) family protein | chr2:15948484-15950228 REVERSE LENGTH=1566
Length=1566
Score = 2405 bits (1302), Expect = 0.0
Identities = 1480/1568 (94%), Gaps = 4/1568 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGTTCTGTCATGGGCTTTTACCGTTGCCTGGTTTACCCTCTGGATGTTGATGCTA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTCAGTTCTGTCATGGGCTTTTACCGTTGCGTGGTTTACCCTCTGGATGTTGATGCTA 60
Query 61 TACTTGACGAACGAGATGAAGCTAAAGTTCACGGACGCAGCTGCGATTGTAAATGTGTTT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TACTTGACGAACGAGATGAAGCTAAAGTTCACAGACGCAGCTGCGATTGTAAATGTGTTT 120
Query 121 GCTGGTGTATCAGCTATTGGTCATCTCAGCATGCAATTTCTAGTTGATGCATTTATTGGT 180
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 121 GCTGGTGTATCAGCTATTGGTCATCTTGGCATGCAATTTCTTGTTGATGCATTTATTGGT 180
Query 181 CACTTTTGGATGCTCTGTCTCTCTACTTTAGCATTCAGTTTCGGTTTCGGGTTCTTGGCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CACTTTTGGATGCTCTGTCTCTCTACTTTAGCATTCAGTTTCGGTTTCGGGTTCTTGGCA 240
Query 241 ATATCAGCGTCACCAATACTTTCTGGCAATGGACAAAAGGGTCTGTTCTACGTAGCCCTA 300
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 241 ATATCAGCGTCACCAATACTTTCAGGCAATGGACAAAAGGGCCTGTTCTACGTAGCGCTA 300
Query 301 ACAGTTATATCCGTTGGTATATTTGGAAGGTCTATCTCTCTGGGAGTATTTACAGAAGAC 360
|| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 301 ACGGTTATATCCGTTGGTATATTTGGACGGTCTATCTCTTTGGGAGTATTTACAGAAGAC 360
Query 361 CAATTAGAAGAAGGTAGGAACAAAGGAAACCCCGCGAAGCTCGTTAGCTTTGTCATTGGA 420
||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 361 CAACTAGAAGACGGTAGGAACAAGGGAAACCCCGCCAAGCTCGTTAGCTTTGTCATTGGA 420
Query 421 AATGTTGGGAATCTTGTGTTCTTGTTACTTGCTGCTATTGCAATGCCTCAGATAAGTCCG 480
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATGTGGGGAATTTTGTGTTCTTGTTACTTGCTGCTATTGCAATGCCTCAGATAAGTCCG 480
Query 481 TGGTTTGT-ACGATTCGCGATCCCCTCGGGCTGTGAGGTATTAGCAATGATGATTTTTCT 539
|||||||| | | ||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 481 TGGTTTGTTAGG-TTCACGATCCCCTCGGGCTGTGAGGTATTAGCAATGCTGATTTTTAT 539
Query 540 GTCCGGTACGTGTTCATACAGACGGGTAAAACCAGGTGGGAGCCCTTTGACAGCAATTTT 599
|||||| |||||||||||| |||||| |||||||||||||||||||||||| | ||||
Sbjct 540 TTCCGGTGCGTGTTCATACAAACGGGTTAAACCAGGTGGGAGCCCTTTGACAACGGTTTT 599
Query 600 CCGGGTCTTTGTGGCTTCTGCTTCCAAAATGTCTTGTGCATACCCGAACAACTCAAGCCA 659
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 CCGGGTCTTTATGGCTTCTGCTTCCAAAATGTCTTGTGCATACTCGAACAACTCAAGCCA 659
Query 660 GCTCTATGAAAAAGCCGAGTGTGATCAAGATATTAAGCCCCACACAAGTAGCTTAAGGTG 719
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 GCTCTATGAAAAAGCTGAGTGTGATCAAGATATTAAGCCCCACACAAGCAGCTTAAGGTA 719
Query 720 CCTAGACAGAGCTGCAATGATACTCCAAACAGAGTCCTTGGAACAACAGAGGAAAAACAG 779
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 TCTAGATAGAGCTGCAATGATACTCCAAACAGAGTCTTTGGAACAACAGAGGAAAAACAG 779
Query 780 ATGGAAGCTTTGTCGGGTGACGGAAGTGGAACAAACGAAAAGCGTCATACGCACGGTTCC 839
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 780 ATGGAAGCTTTGTCGGGTGACAGAAGTGGAGCAAACGAAAAGCGTCATACGCACGGTTCC 839
Query 840 ATTGTTCGCGACATCTCTCATTTCGGGGATTGTTTTCTCCCTCGGTAACACTTTTTTCCT 899
||||| |||||||||||||||||||||||||| ||||| || ||||| ||||| |||||
Sbjct 840 TTTGTTTGCGACATCTCTCATTTCGGGGATTGTCTTCTCTCTTGGTAATACTTTCTTCCT 899
Query 900 CGAACAAGCAAACCATATGGACTCCAAGTTCGGATCATGGAACCTCCCTCTCCCACTCCT 959
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 TGAACAAGCAAACCATATGGACTCCAAGTTCGGATCATGGAACCTTCCTCTCCCACTCCT 959
Query 960 CTTACTCTTTAGTGAGGCTGCAAGACTAGGATCCCGAGAACTATGCGTCATGGCTGCAAA 1019
||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 960 CTTACTCTTTAGTGAAGCTGCAAGGCTAGGATCCCGAGAACTATGTGTCATGGCTGCAAA 1019
Query 1020 ACGCCACGCCATTGACCTCCCTGAATCACCTAAACAAACCAAAACGCCTTATGGTATACC 1079
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACGCCATGCCATTGACTTCCCTGAATCACCTAAACAAACCAAAACGCCTTATGGTATACC 1079
Query 1080 AGTCTCCATCATCCTATCCATCTTCTGCTGCTCAATTGCTGCACACGTTGAGTCCAGGAG 1139
|||||||||||||||||| || || |||||||| || |||||||| |||||||| |||||
Sbjct 1080 AGTCTCCATCATCCTATCGATATTTTGCTGCTCCATCGCTGCACATGTTGAGTCTAGGAG 1139
Query 1140 ACTCAAAGTGGTTAGAACTCAAGGTTTGCTATATGAAACCGTCCCCATGAGTGTATTCTG 1199
|||||||| ||||| ||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 1140 GCTCAAAGTAGTTAGTACTCAAGGTTTACTACATGAAACTGTCCCCATGAGTGTATTCTG 1199
Query 1200 GCTACTCCCACAGTACATTCTTCTCGGGTCAATCACAGGTATCTACGAAAACAGCTTTGC 1259
||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1200 GCTGCTCCCACAGTACATTCTACTCGGTTCAATCACAGGAATCTACGAAAACAGCTTTGC 1259
Query 1260 GCTTTACCTAGAAGAAACGGTGCCTGAAGAGTTGAGCCAATACATGGTTCTATTTAACGT 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1260 GCTTTACCTAGAAGAAACGGTGCCTGAAGAGTTGAGCCAATACATGGTTCTATTAAACGT 1319
Query 1320 GGGCGTGTGCGGGGTGGGGATCATGAGCAATATCGCTCTTGTTAGTGTGGTGGGCAGAGT 1379
||| ||||||||||| |||||||||||||| || |||||||||||| |||||||||| ||
Sbjct 1320 GGGAGTGTGCGGGGTCGGGATCATGAGCAACATTGCTCTTGTTAGTTTGGTGGGCAGTGT 1379
Query 1380 AAGCGGAGGCAAATGGTTTCAAGACACAATAAACAAGAGCCGGTTGGATAACTATTATTG 1439
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1380 AAGCGGAGGCAAATGGTTTCAAGACACAATAAACAAGAGCCGGGTGGATAACTATTATTG 1439
Query 1440 GGTTATAACAGTGTTTTGCATGTTCAATCTCTTGTTATATTTC-TCTGTCACCTATAGGT 1498
||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 1440 GGTTATAACAGTGTTTTGCATGTTCAATCTCTTGTTATATTTCAT-TGTAACCTATAGGT 1498
Query 1499 ACACAATGTGCAACAAGAAAGATGGTGCAACACAAGAAAATGATCGAAGAACAATCGGTT 1558
||||| |||| |||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1499 ACACAGTGTGTAACAAGAAAGATGGTGCAACACAAGAAAATGATCGAAGGATAATCGCTT 1558
Query 1559 TTGTGTAG 1566
|||||||
Sbjct 1559 CTGTGTAG 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77308839300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5