BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321517

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38130.1 | Symbols: ATMAK3 | Acyl-CoA N-acyltransferases (NA...   959    0.0  


> AT2G38130.1 | Symbols: ATMAK3 | Acyl-CoA N-acyltransferases (NAT) 
superfamily protein | chr2:15978512-15980749 REVERSE LENGTH=935
Length=935

 Score =  959 bits (519),  Expect = 0.0
 Identities = 556/574 (97%), Gaps = 2/574 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGAAAAATATGGAAGATAAAGAAGAATTCGATGAGGGTGAGATTGAGTACACGAGT  60
            ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  236  ATGGAGAAAGAGATGGAAGATAAAGAAGAATTCGATGAGGGTGAGATTGAGTACACGAGT  295

Query  61   TATGCTGGTGAGCATCATCTGCCATTGATTATGTCTCTTGTTGACCAAGAACTTAGTGAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  TATGCTGGTGAGCATCATCTGCCATTGATTATGTCTCTTGTTGACCAAGAACTTAGTGAA  355

Query  121  CCTTACTCCATCTTTACTTACCGATACTTCGTCTACCTCTGGCCACAGCTATGCTTCCTG  180
            ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  356  CCTTACTCCATCTTTACTTACCGGTACTTCGTCTACCTCTGGCCGCAGCTATGCTTCCTG  415

Query  181  GCCTTTCACAAAGGTAAATGCGTAGGAACTGTAGTCTGTAAGATGGGGGATCATCGACAG  240
            |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct  416  GCCTTTCACAAAGGTAAATGCGTAGGAACCATAGTCTGTAAGATGGGGGATCATCGACAG  475

Query  241  ACTTTCAGAGGGTACATTGCCATGTTGGTTGTGATTAAACCATACCGTGGCCGAGGCATA  300
            ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct  476  ACTTTCAGAGGGTACATCGCTATGTTGGTTGTGATTAAACCATATCGTGGCCGAGGCATA  535

Query  301  GCCTCAGAGCTGGTCACAAGATCGATAAAAGTGATGATGGAATCAGGCTGTGAAGAGGTA  360
            ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct  536  GCCTCAGAGCTTGTCACAAGAGCGATAAAAGCGATGATGGAATCAGGCTGTGAAGAGGTA  595

Query  361  ACTCTGGAGGCAGAAGTGAGTAACAAAGGAGCATTAGCACTATATGGGCGCCTCGGGTTT  420
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  596  ACTCTGGAGGCAGAAGTGAGTAACAAAGGAGCATTAGCACTATATGGGCGACTCGGGTTT  655

Query  421  ATAAGGGCCAAACGGCTATACCACTATTACTTGAATGGGATGGATGCTTTTCGCCTGAAG  480
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  656  ATAAGAGCCAAACGGCTATACCACTATTACTTGAATGGGATGGATGCTTTTCGCCTGAAG  715

Query  481  CTCTTGTTCCCTAAGCCTCGTGTACCTCAAATACCTTCTCAAGATCAAACCCAACAAGAG  540
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  716  CTCTTGTTCCCTAAGCCTCGTGTACCTCAAATACCTTCTCAAGTTCAAACCCAACAAGAG  775

Query  541  TACGAGAC-TTTCCCTAGGCCTCGTGTACCTTAA  573
            || ||||| ||||| |||||||||||||||||||
Sbjct  776  TATGAGACCTTTCC-TAGGCCTCGTGTACCTTAA  808



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27528312556


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5