BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321526
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38255.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1297 0.0
> AT2G38255.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:16021750-16024854 REVERSE LENGTH=1031
Length=1031
Score = 1297 bits (702), Expect = 0.0
Identities = 912/1011 (90%), Gaps = 24/1011 (2%)
Strand=Plus/Plus
Query 1 ATGGTCGAAGGAAACGTTGATTCAATTTTACAGGAATTTGATTGTGTTGATCTATACAAA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 30 ATGGTTGAAGGAAACGTTGATTCAATTTTACAGGAATTTGATTGTGTTGATATATACAAA 89
Query 61 CAACCCGCTTTCCAACATCCATTGTTGAAAAACCACAAGATTCAGGAAAATTTCAGTTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 90 CAACCCGCTTTCCAACATCCATTGTTGAAAAACCACAAGATTCAGGAAAATTTCAATTTC 149
Query 121 AATGAAAGCCACAATATAAAAAATAAATATAAAGAAAATGATCTAAGTTGTCCAAAAGGA 180
||| ||||||| | |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 150 AATAAAAGCCATATTATAAAAAATAAATATAAAGAAAATGTTCTAAGTTGTCCACAAGGA 209
Query 181 ACAGTGCCAATTTTAAAACAAAGAAATGGAACTGAAAGCGTTCATCTCAACACAATCGAG 240
||||| ||| |||||||||||| |||||||||||||| | |||||||||||||| |||||
Sbjct 210 ACAGTTCCAGTTTTAAAACAAAAAAATGGAACTGAAATCATTCATCTCAACACAGTCGAG 269
Query 241 TATCCCGGCCAACATTTTGCAACAATCGAAACCGTTTTGGATGGAAGCATCTATCGAGGA 300
||||| || |||||||||||||||||||| ||||||||||||||||| ||||| || |||
Sbjct 270 TATCCTGGTCAACATTTTGCAACAATCGAGACCGTTTTGGATGGAAGTATCTACCGGGGA 329
Query 301 GCTGAAGCTATGATAAGTGTTCATAATGTATCTGTA-AGAAATAACCAATACAGCAAAAG 359
|| ||| ||||||||||| ||||||||||| ||||| | |||||||||||| ||||||||
Sbjct 330 GCAGAATCTATGATAAGTATTCATAATGTAACTGTACA-AAATAACCAATATAGCAAAAG 388
Query 360 TCAAATTTGGTTAGAGAATGGACCTCGTGGTGAACTCAATAGCATACAAGTTGGTTGGGC 419
|||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct 389 TCAAATTTGGTTGGAGAATGGACCTCGAGGTGAACTTAATAGCATACAATTTGGTTGGGC 448
Query 420 GGTGCATCCAAGATTATACGGGGATACTTTGACGCGATTTACAATATATTGGACTGCAGA 479
|||||||||||||||||| ||||||||||| |||||| |||| |||||||||||||||||
Sbjct 449 GGTGCATCCAAGATTATATGGGGATACTTTAACGCGACTTACGATATATTGGACTGCAGA 508
Query 480 TGGATATAAGAAAACGGGGTGTTATAATACAAAGTGTCCTGGTTTTGTTATTATAAATCC 539
||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||
Sbjct 509 TGGGTATAAGAAAACTGGGTGTTATAATACAAATTGTCCTGGCTTTGTTATTATAAGTCG 568
Query 540 CTTTCCTGTTA-TTGGAA--GCTTTATTAATAAATCCTCTATTTATGGTGGTAAAGAAAC 596
|||| | | |||||| ||||| | ||| |||||||||||||||||||||||| | |
Sbjct 569 AGTTCC-GCAAATTGGAATCGCTTT-T-AATGAATCCTCTATTTATGGTGGTAAAGGATC 625
Query 597 ATTTGTTATCATACCACAAGTTTTACAGGATGGTTTCAGCGGAAATTGGGCACTAAAA-A 655
| ||||||||| |||||||||||| |||||||||||||| ||||| |||| ||||||| |
Sbjct 626 AGTTGTTATCAGACCACAAGTTTTCCAGGATGGTTTCAGTGGAAACTGGGTACTAAAAGA 685
Query 656 T-CT-T--TGAT-GAAATAATTGGTTATTGGCCCAAAGAACTATTCACACACTTAAATAA 710
|| | ||| |||||| ||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 686 CACTGTCATGAACGAAATAGTTGGTTATTGGCCCAAAAAACTATTTACACACTTAAACAA 745
Query 711 AGGAGCTTCTTTGGTGCGATTTGGAGGAAATACTTTTACATCTCCAAATGGAATTAGTCC 770
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 746 AGGAGCTTCTTTGGTGCGATTTGGAGGAAATACTTTTACATCTCCGGATGGAATTAGTCC 805
Query 771 TCCAATGGGAAATGGACATTTTCCGGTTTTT-GACT-TTCATAAAAGTTCATATTATATT 828
|||||||||||||||||||||||||||| || | || || |||||||||| ||||| ||
Sbjct 806 TCCAATGGGAAATGGACATTTTCCGGTTATTAG-CTATTT-TAAAAGTTCACATTATGTT 863
Query 829 CATGTTAAAGTGAAGAATTCAAATTATCAACTAGTTGATATTGAA-GATAGGAGAGCAAG 887
||||||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct 864 CATGTTAAAGTTAAGAATTCAAATTATCAACTAGTTGATATTGAAAGC-AGGAAAGCAAG 922
Query 888 GCA-ATATGCAGATTCTTATCAGTGTTATAGATTATCATACTGGGGTTATTCCAAGCCAA 946
| | ||||||||||||||| || ||||||||| |||||||||||||||||| |||| |||
Sbjct 923 G-ATATATGCAGATTCTTACCAATGTTATAGACTATCATACTGGGGTTATTTCAAGTCAA 981
Query 947 ATGGAGTA-GCTTTCTCTTTTGGGGGACCAGGTGGAAACTGTGATATTTGA 996
||||||| | ||||||||||||||||||||||||||| |||| |||||||
Sbjct 982 CTGGAGTAAG-TTTCTCTTTTGGGGGACCAGGTGGAAAATGTGGTATTTGA 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5