BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg321526 Length=996 Score E Sequences producing significant alignments: (Bits) Value AT2G38255.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1297 0.0 > AT2G38255.1 | Symbols: | Protein of Unknown Function (DUF239) | chr2:16021750-16024854 REVERSE LENGTH=1031 Length=1031 Score = 1297 bits (702), Expect = 0.0 Identities = 912/1011 (90%), Gaps = 24/1011 (2%) Strand=Plus/Plus Query 1 ATGGTCGAAGGAAACGTTGATTCAATTTTACAGGAATTTGATTGTGTTGATCTATACAAA 60 ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 30 ATGGTTGAAGGAAACGTTGATTCAATTTTACAGGAATTTGATTGTGTTGATATATACAAA 89 Query 61 CAACCCGCTTTCCAACATCCATTGTTGAAAAACCACAAGATTCAGGAAAATTTCAGTTTC 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 90 CAACCCGCTTTCCAACATCCATTGTTGAAAAACCACAAGATTCAGGAAAATTTCAATTTC 149 Query 121 AATGAAAGCCACAATATAAAAAATAAATATAAAGAAAATGATCTAAGTTGTCCAAAAGGA 180 ||| ||||||| | |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 150 AATAAAAGCCATATTATAAAAAATAAATATAAAGAAAATGTTCTAAGTTGTCCACAAGGA 209 Query 181 ACAGTGCCAATTTTAAAACAAAGAAATGGAACTGAAAGCGTTCATCTCAACACAATCGAG 240 ||||| ||| |||||||||||| |||||||||||||| | |||||||||||||| ||||| Sbjct 210 ACAGTTCCAGTTTTAAAACAAAAAAATGGAACTGAAATCATTCATCTCAACACAGTCGAG 269 Query 241 TATCCCGGCCAACATTTTGCAACAATCGAAACCGTTTTGGATGGAAGCATCTATCGAGGA 300 ||||| || |||||||||||||||||||| ||||||||||||||||| ||||| || ||| Sbjct 270 TATCCTGGTCAACATTTTGCAACAATCGAGACCGTTTTGGATGGAAGTATCTACCGGGGA 329 Query 301 GCTGAAGCTATGATAAGTGTTCATAATGTATCTGTA-AGAAATAACCAATACAGCAAAAG 359 || ||| ||||||||||| ||||||||||| ||||| | |||||||||||| |||||||| Sbjct 330 GCAGAATCTATGATAAGTATTCATAATGTAACTGTACA-AAATAACCAATATAGCAAAAG 388 Query 360 TCAAATTTGGTTAGAGAATGGACCTCGTGGTGAACTCAATAGCATACAAGTTGGTTGGGC 419 |||||||||||| |||||||||||||| |||||||| |||||||||||| |||||||||| Sbjct 389 TCAAATTTGGTTGGAGAATGGACCTCGAGGTGAACTTAATAGCATACAATTTGGTTGGGC 448 Query 420 GGTGCATCCAAGATTATACGGGGATACTTTGACGCGATTTACAATATATTGGACTGCAGA 479 |||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||| Sbjct 449 GGTGCATCCAAGATTATATGGGGATACTTTAACGCGACTTACGATATATTGGACTGCAGA 508 Query 480 TGGATATAAGAAAACGGGGTGTTATAATACAAAGTGTCCTGGTTTTGTTATTATAAATCC 539 ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||| || Sbjct 509 TGGGTATAAGAAAACTGGGTGTTATAATACAAATTGTCCTGGCTTTGTTATTATAAGTCG 568 Query 540 CTTTCCTGTTA-TTGGAA--GCTTTATTAATAAATCCTCTATTTATGGTGGTAAAGAAAC 596 |||| | | |||||| ||||| | ||| |||||||||||||||||||||||| | | Sbjct 569 AGTTCC-GCAAATTGGAATCGCTTT-T-AATGAATCCTCTATTTATGGTGGTAAAGGATC 625 Query 597 ATTTGTTATCATACCACAAGTTTTACAGGATGGTTTCAGCGGAAATTGGGCACTAAAA-A 655 | ||||||||| |||||||||||| |||||||||||||| ||||| |||| ||||||| | Sbjct 626 AGTTGTTATCAGACCACAAGTTTTCCAGGATGGTTTCAGTGGAAACTGGGTACTAAAAGA 685 Query 656 T-CT-T--TGAT-GAAATAATTGGTTATTGGCCCAAAGAACTATTCACACACTTAAATAA 710 || | ||| |||||| ||||||||||||||||| ||||||| ||||||||||| || Sbjct 686 CACTGTCATGAACGAAATAGTTGGTTATTGGCCCAAAAAACTATTTACACACTTAAACAA 745 Query 711 AGGAGCTTCTTTGGTGCGATTTGGAGGAAATACTTTTACATCTCCAAATGGAATTAGTCC 770 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 746 AGGAGCTTCTTTGGTGCGATTTGGAGGAAATACTTTTACATCTCCGGATGGAATTAGTCC 805 Query 771 TCCAATGGGAAATGGACATTTTCCGGTTTTT-GACT-TTCATAAAAGTTCATATTATATT 828 |||||||||||||||||||||||||||| || | || || |||||||||| ||||| || Sbjct 806 TCCAATGGGAAATGGACATTTTCCGGTTATTAG-CTATTT-TAAAAGTTCACATTATGTT 863 Query 829 CATGTTAAAGTGAAGAATTCAAATTATCAACTAGTTGATATTGAA-GATAGGAGAGCAAG 887 ||||||||||| ||||||||||||||||||||||||||||||||| | |||| |||||| Sbjct 864 CATGTTAAAGTTAAGAATTCAAATTATCAACTAGTTGATATTGAAAGC-AGGAAAGCAAG 922 Query 888 GCA-ATATGCAGATTCTTATCAGTGTTATAGATTATCATACTGGGGTTATTCCAAGCCAA 946 | | ||||||||||||||| || ||||||||| |||||||||||||||||| |||| ||| Sbjct 923 G-ATATATGCAGATTCTTACCAATGTTATAGACTATCATACTGGGGTTATTTCAAGTCAA 981 Query 947 ATGGAGTA-GCTTTCTCTTTTGGGGGACCAGGTGGAAACTGTGATATTTGA 996 ||||||| | ||||||||||||||||||||||||||| |||| ||||||| Sbjct 982 CTGGAGTAAG-TTTCTCTTTTGGGGGACCAGGTGGAAAATGTGGTATTTGA 1031 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48777356737 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5