BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321547

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38480.1 | Symbols:  | Uncharacterised protein family (UPF04...   898    0.0  


> AT2G38480.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr2:16110741-16111797 REVERSE LENGTH=889
Length=889

 Score =  898 bits (486),  Expect = 0.0
 Identities = 542/569 (95%), Gaps = 4/569 (1%)
 Strand=Plus/Plus

Query  1    ATGACGAATCCCGACAAACA-GAAGCCGGTTGAAGTTACTGACGTGGAGA-CTGCGGCGG  58
            ||||||||||||||  |||| ||| |||||||||| |||||||||||| | |||||||||
Sbjct  104  ATGACGAATCCCGA-TAACATGAAACCGGTTGAAGCTACTGACGTGGA-ATCTGCGGCGG  161

Query  59   AGAAGACGTCGGAGCCGACGCCGGCGTCTGGAACGTCGACGATTACTCAGAGATGGAAAA  118
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  162  AGAAGACGTCGGAGCCGACGCCGGCATCTGGAACGTCGACGATTACTCAGAGATGGAAAA  221

Query  119  GAGAGGATTTGATAAAGAAAGCATCTCCGATTACGAGAGGAATTTGTCTATTGTTCTCTC  178
            ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  222  GAGAGGATTTGATAAAGAAAGCATCTCCGATTACGAGAGGAATCTGTCTTTTGTTCTCTC  281

Query  179  TTATTGCTTTCTTAATTATGGTCTCTAATAAACATGGTTACGGTAGAAACTTCAATGAGT  238
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  282  TTATTGCTTTCTTAATTATGGTCTCTAATAAACATGGTTACGGTAGAAACTTCAATGACT  341

Query  239  ACGAAGAGTACAGATATGTATTGGCGATATCGATTATTTCAACATTATACACTGCGTGGC  298
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  342  ACGAAGAGTACAGATATGTATTGGCGATTTCGATTATTTCAACATTATACACTGCGTGGC  401

Query  299  AAACATTTGCACATTTCTCAAAAAGGGAATTTTTCGATCGCCGGACATCAACTTTGGTCG  358
            ||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||||
Sbjct  402  AAACATTTGCACATTTCTCAAAAAGGGAAATTTTCGATCGCCGGACTTCTATTTTGGTCG  461

Query  359  ATTTCTCCGGCGACCAGATTGTAGCGTATTTGCTCATATCAGCTGCATCTTCTGCAATTC  418
            |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct  462  ATTTCTCCGGCGACCAGATTGTGGCGTATTTGCTTATATCAGCTGCATCATCTGCAATTC  521

Query  419  CATTGACAAACAGATTCAGAGAAGGTCAAGATAACATTTTCACTGATTCTGCTGCTTCTG  478
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  522  CATTGACAAACATATTCAGAGAAGGTCAAGATAACATTTTCACTGATTCTGCTGCTTCTG  581

Query  479  CTATCAGCATGGCTATCTTCGCATTCGTCGCGTTAGCTCTCTCTGCTCTCTTCTCCGGTT  538
            |||| || |||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct  582  CTATAAGTATGGCTATCTTCGCATTCATTGCTTTAGCTCTCTCTGCTCTCTTCTCCGGTT  641

Query  539  ACAAACTCTCCACTCATTCTTTCATTTGA  567
            |||||||||||||||||||||| || |||
Sbjct  642  ACAAACTCTCCACTCATTCTTTTATCTGA  670



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27226907674


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5