BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321557
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38600.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 1230 0.0
> AT2G38600.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr2:16145907-16146857 FORWARD LENGTH=756
Length=756
Score = 1230 bits (666), Expect = 0.0
Identities = 727/757 (96%), Gaps = 2/757 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAAGTGTAGGAGAGAGACGTTGCTTCTCATTTTCCTAACAATATCATCAGTGGCA 60
|||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1 ATGGAAAAGTGTAGTAGAGAGACGTTGCTTTTCATTTTTATAACAATATCATCAGTGGCA 60
Query 61 AGCGGCACAAGTCCATGGATGCCGATGGACGGAAATTATGGTACTAGTTATTGCTTAAGC 120
| | | |||||| |||||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 61 ACCAGTACAAGTACATGGATGCCGATGGATGGAAATTATGGTGCTAGCTATTGCTTAAGC 120
Query 121 TGGAGACTAGCAGTAGAGACCAACAATGTACGTGCGTGGCGCATTGTTCCTCTGCAGTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAGACTAGCAGTAGAGACCAACAATGTACGTGCGTGGCGCATTGTTCCTCTGCAGTGT 180
Query 181 CTGCATTACGTTGAGGTATATATGCTTGCTGGTCAGTATGACAGAGACGTCCAGTTGACT 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGCGTTACGTTGAGGTATATATGCTTGCTGGTCAGTATGACAGAGACGTCCAGTTGACT 240
Query 241 GTGGACCAAAT-AAGGGTTTATCTCAATGAGATAACCCTCCCTGGTGATGGCATGGACGC 299
||||||||||| || | |||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 241 GTGGACCAAATCAAAG-TTTATCTCAATGAGATTATCCTTCCTGGTGATGGCATGGACGC 299
Query 300 ATGGATCTTGGATGTTGATGATACTTGCTTCTCAAATGTCTTTTACTATCGCCTTAAGAG 359
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 300 ATGGATCTTGGATGTTGATGATACTTGCTTCTCAAACGTCTTTTACTATCGGCTTAAGAG 359
Query 360 ATATGGATGTGACCCTTATGATCCAACCGGATTTAGAACATGGGCGATGAAAGGAGAGTC 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 ATATGGATGTGACCCTTATGATCCAACTGGATTTAGAACATGGGCGATGAAAGGAGAGTC 419
Query 420 TCCAGCAATACAACCTGTTCTTGAATTGTTCAATAAACTGATAGAAACAGGCTTCAAAGT 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 TCCAGCAATACAACCTGTTCTTGAATTGTTCTATAAACTGATAGAAACAGGCTTCAAAGT 479
Query 480 TTTCCTAATAACCGGAAGAGACGAAGAGACCCTTCGTCAGGCAACAGTAGAGAATTTGCA 539
||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 480 TTTCCTAGTAACCGGAAGAGACGAAGAGACCCTTCGCCAGGCAACACTAGAGAATTTGCA 539
Query 540 TAACCAAGGATTCACTGGTTATGAAAGGTTGATTATGAGGACAGCAGATAACAAAAGACA 599
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 540 TAACCAAGGATTCACTGGTTATGAAAGGCTGATTATGAGGACAGCGGATAACAAAAGACA 599
Query 600 AAGCGCAACAACATACAAAACAAGAGTCAGAAAGGAAATGATGGAAGAAGGTTACAGGAT 659
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 600 AAGCGCAACAACATACAAAACAAGAATCAGAAAGGAGATGATGGAAGAAGGTTACAGGAT 659
Query 660 ATGGGGAAATGTAGGCGACCAATGGAGTGACTTACAAGGAGAATATACAGGGGATCGTAC 719
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 660 ATGGGGAAATGTAGGCGACCAATGGAGTGACTTACAAGGAGAATATTCAGGGGATCGTAC 719
Query 720 CTTCAAGATTCCTAATCCTATGTACTTCGTTCCCTAA 756
|||||||||||||||||||||||||||||||||||||
Sbjct 720 CTTCAAGATTCCTAATCCTATGTACTTCGTTCCCTAA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5