BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321574
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2119 0.0
> AT2G38780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to
58 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa
- 1; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes
- 9 (source: NCBI BLink). | chr2:16210857-16214232 FORWARD
LENGTH=1527
Length=1527
Score = 2119 bits (1147), Expect = 0.0
Identities = 1301/1375 (95%), Gaps = 11/1375 (1%)
Strand=Plus/Plus
Query 10 CCACGAGTCTTTG-AAACTTTGCCACTCCAAAAATGGCTAACCAGCTCTTCTCTGCACCA 68
|||| ||||| || |||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 35 CCACAAGTCTGTGAAAACATTG-CACTCCAAAAATGGCTAACCAGCTCTTCTCTCCACCA 93
Query 69 ACCCATGGCTTCTTTCAACCACTCCTGGCTCTCTTCTCCACTCACCGAAACTCCTACTTG 128
| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 94 AACCATGGCTTCTTTCAACCACTCTTGGCTCTCTTCTCCACTCACCGAAACTCCCGCTTT 153
Query 129 CTTTTTGTATCCATCCCAACAGCCAAAATCCTTGAAACTCTCACTTTTCCGAACTCGGAG 188
|||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 154 CTTTTTTTCTCCATCTCAACACCCAAAATCCTTGAAACTCTCACTTTTCCGAACTCGGAG 213
Query 189 CAA--C-TCCTCGTCGGAACGCTCGTCGGAGGTTGAGCTCGCCGTGGATCCGGTGAAGCT 245
||| | ||||| |||| |||||||| ||||||||||||| |||||||||||||||||
Sbjct 214 CAACTCGTCCTCACCGGACCGCTCGTCAGAGGTTGAGCTCGATGTGGATCCGGTGAAGCT 273
Query 246 TGCATTGAAGAAAGCCGAAGCTTATAAGAAATCGAAATCGGAGGGAAAAGAACGAGAGCA 305
|||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||| |
Sbjct 274 CGCATTGAAGAAAGCCGAAGCTTATAAGAAATCGAAATCAGAGCAAAAAAAACCAGAGAA 333
Query 306 AAATGCCGGCGACGAGGAATTGCCGCTCTCGGTTAAGGCTGCTATGCAAAAAGCCAATGA 365
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 334 AAATGCCGGCGACGAGGAATTGCCGCTCTCTGTTAAGGCTGCTATGCAAAAAGCCAATGA 393
Query 366 CTATAAGAAAAGGAAAGGGCTTGGAACTGATGCTGTCG-AGGAAGCTAAACCCAGTAGTA 424
||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||
Sbjct 394 TTATAAGAAAAGGAAAGGACTTGGAACTGATGCTGTCGCA-AAAGCTAAACCCAGTAATA 452
Query 425 CAGAGCAAAGTTTTGTTAGATCATCAAACAAGGTTGTTGAAGATAATGATGTTAAGAAGA 484
|||| |||||||| ||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct 453 CAGATCAAAGTTTCGTTAGATTAGCAAATAAGGTTGTTGAAGATAATGATGTTAAGAAGA 512
Query 485 AAGAATTGAAAGTCTCCAGCATTGATTTCATGGGGCTTGGCTTTGCTGATAAGAAAAGCA 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 513 AAGAATTGAAAGTCTCCAGCATTGATTTCATGGGGCTTGGCTTTGCTGATAAGAAGAGCA 572
Query 545 CAAGAGGGCTTCCAGCGGGACTTGTTCCTATTGTCGACTATCTTCCTGAAGGAGACTTAC 604
| || |||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 573 CGAGGGGGCTTCCAGCGGGACTTGTTCCTGTTGTTGACTATCTTCCTGAAGGAGACTTAC 632
Query 605 CTGAGGTGGAGTTTATTGTTGGTGATAAAACAAGATTTGCGGAGAAAGTAAAGGAGGTCG 664
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 633 CTGAGGTGGAGTTTATTGTTGGTGATAAAACAAGATTTGCGGAGAAAGTAAAGGAGGTTG 692
Query 665 AGCAAGAAGGAGATGGAAACTCTGATGTGTATAAGCCCAAAGTTTCTACATGGGGAGTTT 724
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 693 AGCAAGAAGGAGATGGAAACTCTGATGTGTATAAACCCAAAGTTTCTACATGGGGAGTTT 752
Query 725 TCCCAAGACCTAGCAACATCTCTAAGACGTTTGGTGGTGGAAGGACACTCCGACCGGGGG 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TCCCAAGACCTAGCAACATCTCTAAGACGTTTGGTGGTGGAAGGACACTCCGACCGGGGG 812
Query 785 ATTCAGTTGAGACCGCTGAAGAGAGGATTGTGAGAGAAGAACAGACaaaaaaaTTGCTCA 844
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 813 ATTCAGTTGAGACCGCTGAAGAGAGGATTGTGAGAGAAGAAAAGACAAAAAAATTGCTCA 872
Query 845 TAGCCTACAAGGAATCAATCGGACTGAACATTGATCCCAAACTCAAACTTGAGTGTGAGA 904
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 TAGCCTACAAGGAATCACTCGGACTGAACATTGATCCCAAACTCAAACTTGAGTGTGAGA 932
Query 905 AGGCAATAGAAGAGGGGAACTCGCTTATGGATTCTGGGAAACTCAAGGAAGCTTTGCCAT 964
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 AGGCAATAGACGAGGGGAACTCGCTTATGGATTCTGGGAAACTCAAGGAAGCTTTGCCAT 992
Query 965 ACTATGAAAAGGTCATGGAGAAAATAGTTTTCAAGAGTGAGCTTCATGGACTAGCGGCTT 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 ACTATGAAAAGGTCATGGAGAAAATAGTTTTCAAGAGTGAGCTTCATGGACTAGCGGCTT 1052
Query 1025 TGCAGTGGTCTATTTGTCAGGATTCACTTCGAAAGACAGACAAAGCAAGGCGCATGTATG 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 TGCAGTGGTCTATTTGTCAGGATTCACTTCGAAAGACAGACAAAGCAAGGCGCATGTATG 1112
Query 1085 AGAAGCTTATATCCCACCCAAACTCGGGAGTGAGCAAGAAAGCGAGGCAGTTCATGTTCA 1144
|||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1113 AGAAGCTTATTTCCCATCCAAACCCGGGAGTGAGCAAGAAAGCGAGGCAGTTCATGTTCA 1172
Query 1145 GTTTTCAGGCAATGGAGATGCTGAAGGTTAAGGGGTCGAGCTT--CATCGATGGAAACAC 1202
||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||
Sbjct 1173 GTTTTCAGGCAATGGAGATGCTGAAGGTTAAGGGGTCGAGCTTTGC-T-GAAGGAAACAC 1230
Query 1203 TGGTTATCAGGACTACTTTGAAGCCTTTGTCAAAGATAATACGGATTACCAAGCGCAAGA 1262
|||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||| ||
Sbjct 1231 TGGTTATCAGGACTACTTTGAAGCCTTTGTTGAAGATAAAACGAATTACAAAGCGCAGGA 1290
Query 1263 AGAAAAAGAAGGAGAGGCAATGGGGATAAATGAGACACTCCTATATGTGATTCTTCTTGC 1322
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 GGAAAAAGAAGGAGAGGAAATGGGGATAAATGAGACACTCCTATATGTGATTCTTCTTGC 1350
Query 1323 GTCTCCGATTCTAATGGTCTTCATTGTGGCTGCACAGAGAGGGAATATGCACTGA 1377
|||||||||||||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct 1351 TTCTCCGATTCTAATGGTCTTCATTGTAGCTGCACAGAGAGGGTATACACACTGA 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5