BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321588
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38920.1 | Symbols: | SPX (SYG1/Pho81/XPR1) domain-containi... 1280 0.0
> AT2G38920.1 | Symbols: | SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger) protein-related
| chr2:16248146-16251002 REVERSE LENGTH=1508
Length=1508
Score = 1280 bits (693), Expect = 0.0
Identities = 909/1013 (90%), Gaps = 16/1013 (2%)
Strand=Plus/Plus
Query 1 ATGAAGTTTGGAGAGACGTTTACGGAATATCTACATGGAGAAGAGGAGTGGTTCCTAGAA 60
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 227 ATGAAGTTTGGTGAGACGTTCACGGAATATCTACATGGAGAAGAGGAATGGTTCCTGGAG 286
Query 61 AAATGTCGTCAT-GTAGAATACAAGAAACTCAAGAAAGTGTTGAAGAAATGCAAGACATG 119
|| ||||| | | || ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 287 AAGTGTCG-CTTCGTTGAATATAAGAAACTTAAGAAAGTGTTGAAGAAGTGCAAGACATG 345
Query 120 TAACTCCACAAGATCTAATGATGAACACATTGTCTCATCGGCTA---C-T--TCTTTGTC 173
|||||| |||| |||| |||||| ||| || || |||| |||| | | ||||||||
Sbjct 346 TAACTCTACAAAATCTGATGATGGACAAATCATCCCATCTGCTACTTCTTCATCTTTGTC 405
Query 174 TGATTCATGCCAATGCCAATCTTGCTCTTGGTGTGATGAGATGTTCTTTGCGGAGCTGAT 233
|||||||||| ||||| || ||||| ||||||||||| |||||||||| | |||||||||
Sbjct 406 TGATTCATGCGAATGCAAAGCTTGCCCTTGGTGTGATCAGATGTTCTTCGAGGAGCTGAT 465
Query 234 GAAAGAAGTTTA-TGGCATAGCGGGATGCTTCAGGTCAAGAGTGAGGCATCTTCTCCATC 292
|||||||| || || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 466 GAAAGAAG-CTACTGACATAGCGGGATTTTTCAGGTCAAGAGTGAGGCATCTTCTCCATC 524
Query 293 TTCATGTAGCCACTGGGATGCAGAGATACATGATGAGTCTACGCAGATGCTTCACGGATG 352
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |
Sbjct 525 TTCATGTAGCCACTGGGATGCAGAGATACATGATTCGCCTACGCAGATGCTTCACTGACG 584
Query 353 AAAAACAAGCTTTACTCCAAGAGGGCCAATTCTTGATTCAGTACATCACCATGAATGCGA 412
|||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| |
Sbjct 585 AAAAACAAGCTTTAGTCCAAGAGGGCCAAATCTTGATTCAATACATCACCATGAATGCAA 644
Query 413 TTGCCATCCGTAAAATCCTCAAGAAATATGACAAGGTGCATAGCTCAGTGAATGGTAAGA 472
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 645 TTGCTATCCGTAAAATCCTCAAGAAATATGACAAGGTGCATAGCTCAGAGAATGGGAAGA 704
Query 473 AATTCAAGTTGAAAATGCGAGCGGAGCGCATAGAGCTTTTGCACTCACCTTGGCTCATAG 532
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 705 ATTTCAAGTTGAAAATGCGAGCGGAGCGCATAGAGCTCTTGCACTCACCATGGCTCATAG 764
Query 533 AACTTGGAGCCTTTTATATCAA-TACTGGACTTGACAAAGTTGGAAACTTCAAGAACTCG 591
||||||||||||||||| |||| | |||| || || || ||||||||||||||||| |||
Sbjct 765 AACTTGGAGCCTTTTATCTCAACT-CTGGGCTAGATAATGTTGGAAACTTCAAGAATTCG 823
Query 592 TTTGGCCGCGTCTCCTGTGATTATCTCAACGACGATCAGCCTA-TGATGCAACTCATGCT 650
|||||||| ||| | ||||| |||||||||| ||||| || | || | ||||||||||
Sbjct 824 TTTGGCCGTGTCGCTTGTGAAAATCTCAACGAAGATCAACC-AGTGCTAAAACTCATGCT 882
Query 651 GCCTAATTCAATAGAGCTCGAGTTTGATCTAACTTGCGCAATCTGCCTCGAAACGGTATT 710
|||||| ||||||||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct 883 GCCTAACTCAATAGAGCTGGAGTATGATCTAACTTGTGCAATCTGCCTCGAAACGGTATT 942
Query 711 CAATCCCTACGCTTTAAAGTGCGGTCACATATTTTGTAAAGCATGTGCGTGCTCGGCTGC 770
||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 943 CAATCCCTATGCTTTAAAGTGCGGTCACATATTTTGTAACTCGTGTGCATGCTCGGCTGC 1002
Query 771 TTCTGTAATGATTTTCCAAGGGATTAAAGCAGCACCA-GAAAATTCCAAATGTCCCATCT 829
||||||| ||||||||||||| ||||||||||| || || | ||| |||||||||||||
Sbjct 1003 TTCTGTATTGATTTTCCAAGGCATTAAAGCAGCGCCCCGACA-TTCAAAATGTCCCATCT 1061
Query 830 GCAGAGAGGTTGGAGTTTACGCAGAAGCAGTTCACATGATTGAGCTGCATCTTCTCTTAA 889
||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1062 GCAGAGAGGCTGGAGTTTACGCGGAAGCAGTTCACATGATCGAGCTGCATCTTCTTTTAA 1121
Query 890 AGATAAGAAGCAAAGAGTATTGGAAGGAGAGGATGATGGGTGAACGGTCTGAGATGGTGA 949
||| | |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1122 AGACACGAAGCAAAGAATATTGGAAGGAGAGGATGATGAATGAACGGTCTGAGATGGTGA 1181
Query 950 AGCAGTCTAAGATGTTTTGGAATGAACAGACGAAGCATATGATCGGTTACTAA 1002
||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1182 AGCAGTCGAAGATGTTTTGGAATGAACAGACGAAGCATATGATCGGTTATTAA 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5