BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321591
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38960.3 | Symbols: ERO2 | endoplasmic reticulum oxidoreduct... 2187 0.0
> AT2G38960.3 | Symbols: ERO2 | endoplasmic reticulum oxidoreductins
2 | chr2:16265399-16268334 FORWARD LENGTH=1680
Length=1680
Score = 2187 bits (1184), Expect = 0.0
Identities = 1329/1400 (95%), Gaps = 6/1400 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGAGACGGACGTCGGAAGCGTGAACGGAAAGGAGAAAGGATCGGGAAAGCGCTGG 60
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 57 ATGGCGGAGACGGACGTCGGAAGTGTGAAGGGGAAGGAGAAAGGATCGGGAAAGCGCTGG 116
Query 61 ATTTTGCTGATCGGAGCTATAGCTGCCGTTCTATTGGCCGTCGTGGTCGCTGTGTTTTTG 120
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 117 ATTTTGCTGATCGGAGCTATAGCTGCCGTTCTGTTAGCCGTCGTGGTCGCTGTGTTTTTG 176
Query 121 AATACTCAGAATTCGTCGATTTCTGAATTTACCGGAAAAATATGCAATTGCCGTCAGGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AATACTCAGAATTCGTCGATTTCTGAATTTACCGGAAAAATATGCAATTGCCGTCAGGCT 236
Query 181 GAGCAGCATAAGTACATTGGGATAGTTGAAGATTGTTGTTGTGATTATGAAACTGTGAAT 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAGCAGCAGAAGTACATTGGGATAGTTGAAGATTGTTGTTGTGATTATGAAACTGTGAAT 296
Query 241 CGACTAAACACGGAAGTGTTGAATCCATTGCTTCAGGACCTTGTTAAGACACCGTTTTAC 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 297 CGGCTAAACACGGAAGTGTTGAATCCATTGCTTCAGGACCTTGTTAAGACACCATTTTAC 356
Query 301 AGATATTTCAAGGTTAAACTGTGGTGTGATTGCCCGTTTTGGCCTGATGATGGCATGTGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AGATATTTCAAGGTTAAACTGTGGTGTGATTGCCCGTTTTGGCCTGATGATGGCATGTGC 416
Query 361 CGGTTAAGAGACTGTAGTGTTTGTGAATGTCCTGAAAGCGAGTTCCCTGAAATATTTAAG 420
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 CGGTTAAGAGACTGCAGTGTTTGTGAATGTCCTGAAAGCGAGTTCCCTGAAGTATTTAAG 476
Query 421 AAGCCATTAAGCCAATACAATCCTGTTTGTCAAGAAGGGAAACCACAAGCTACTGTTGAT 480
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 477 AAGCCATTAAGTCAATACAATCCTGTTTGTCAAGAGGGGAAACCGCAAGCTACTGTTGAT 536
Query 481 CGTACCTTGGATACTAGAGCTTTCAGGGGTTGGACAGTCACAGACAATCCCTGGACAAGT 540
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 537 CGTACCTTGGATACTAGAGCTTTTAGGGGTTGGACAGTCACAGACAATCCCTGGACCAGT 596
Query 541 GATGATGAAACGGACAACGATGACATGACATATGTTAATCTTCTGCTAAATCCCGAACGG 600
||||||||||| ||||| ||||| ||||||||||||||||||| ||| ||||| ||||||
Sbjct 597 GATGATGAAACTGACAATGATGAAATGACATATGTTAATCTTCGGCTTAATCCTGAACGG 656
Query 601 TACACTGGCTATATTGGCCCATCAGCTAGAAGGATATGGGAAGCTATATACTCTGAGAAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TACACTGGCTATATTGGCCCATCAGCTAGAAGGATATGGGAAGCTATATACTCTGAGAAC 716
Query 661 TGTCCCAAACATACATCTGAAG-AGTCGTGCCGAGAAGAAAAGATATTGTACAAATTGGT 719
|||||||||||||||||||||| | || |||| |||||| ||||| ||||||||||||||
Sbjct 717 TGTCCCAAACATACATCTGAAGGA-TCTTGCCAAGAAGAGAAGATCTTGTACAAATTGGT 775
Query 720 CTCTGGTCTTCACTCATCTATTTCAGTTCATATAGCTTCAGATTATTTACTTGATGAAGC 779
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 776 TTCTGGTCTTCACTCATCCATTTCAGTTCATATCGCTTCAGATTATTTACTTGATGAAGC 835
Query 780 TACAAACTTGTGGGGTCAAAACCTGACTTTGTTGTATGATCGTGTGTTAAGATACCCAGA 839
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 836 TACAAACTTGTGGGGTCAAAACCTGACGTTGTTGTATGATCGTGTGTTAAGATACCCAGA 895
Query 840 TCGCGTTCAGAACCTATACTTCACATTTTTATTTGTTCTTCGAGCAGTAACAAAGGCAGA 899
||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 896 CCGCGTTCAGAACCTATACTTCACATTTTTGTTCGTTCTTAGAGCAGTAACAAAGGCAGA 955
Query 900 AGCTTACTTGGGAGAGGCTGAATATGAGACTGGTAATGTCATTGAGGACTTGAAGACTAA 959
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 956 AGATTACTTGGGAGAGGCTGAATATGAGACTGGTAATGTGATTGAGGACTTGAAGACCAA 1015
Query 960 ATCTCTGGTGAAGCAAGTAGTTAGTGACCCCAAAACTAAAGCAGCTTGTCCAGTACCATT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ATCTCTGGTGAAGCAAGTAGTTAGTGACCCCAAAACTAAAGCAGCTTGTCCAGTACCATT 1075
Query 1020 TGATGAAGCTAAGCTTTGGAAAGGCCAACGTGGACCTGAACTGAAGCAACAAATACAAAA 1079
||||||||| ||||| |||||||||||||||||||| ||||||||||||||| || ||||
Sbjct 1076 TGATGAAGCAAAGCTCTGGAAAGGCCAACGTGGACCAGAACTGAAGCAACAATTAGAAAA 1135
Query 1080 ACAATTCAGAAACATAAGTGCAATAATGGACTGTGTAGGCTGTGAGAAATGTCGTCTATG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1136 ACAATTCAGAAACATAAGTGCAATAATGGACTGTGTAGGCTGTGAGAAATGCCGTCTATG 1195
Query 1140 GGGAAAGCTCCAGATTCTTGGCCTCGGCACTGCACT-AAAGAT-CTTGTTCACTGTCCAT 1197
||||||||| |||||||| || ||||| |||||| | ||| || || ||||||||| ||
Sbjct 1196 GGGAAAGCTTCAGATTCTCGGTCTCGGTACTGCATTGAAA-ATTCTA-TTCACTGTCAAT 1253
Query 1198 GGTGAAGACAATCTGCGTCATAGTCTTGAATTGCAAAGGAATGAAGTGATTGCGCTGATG 1257
|||||||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 1254 GGTGAAGACAATTTGCGTCATAATCTCGAATTGCAAAGGAACGAAGTGATTGCGCTGATG 1313
Query 1258 AATCTTCTCAACCGATTATCTGAATCGGTGAAATATGTACATGACATGAGTCCTGCGGCC 1317
||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1314 AATCTTCTCCACCGATTATCTGAATCCGTGAAGTATGTTCATGACATGAGTCCTGCGGCC 1373
Query 1318 GAGAGAATTGCAGGTGGACGGGCCTCTTCAGGGAACAGCATTTGGCAGAGAATAGTGACA 1377
|||||||| |||||||||| |||||||||||||||||| ||||||| ||||||||||||
Sbjct 1374 GAGAGAATCGCAGGTGGACATGCCTCTTCAGGGAACAGCTTTTGGCAAAGAATAGTGACA 1433
Query 1378 TCTTTAACGCAAACAAAAGT 1397
||| || ||||| |||||||
Sbjct 1434 TCTATAGCGCAATCAAAAGT 1453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5