BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321600
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39060.1 | Symbols: SWEET9, AtSWEET9 | Nodulin MtN3 family p... 1336 0.0
> AT2G39060.1 | Symbols: SWEET9, AtSWEET9 | Nodulin MtN3 family
protein | chr2:16306688-16308252 REVERSE LENGTH=953
Length=953
Score = 1336 bits (723), Expect = 0.0
Identities = 760/778 (98%), Gaps = 2/778 (0%)
Strand=Plus/Plus
Query 1 ATGTTCCTCAAGGTTCATGAACTTGCTTTTCTCTTTGGTCTCTTAGGCAACATTGTGTCT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 47 ATGTTCCTCAAGGTTCATGAAATTGCTTTTCTCTTTGGTCTCTTAGGCAACATTGTGTCT 106
Query 61 TTTGGGGTGTTCTTGTCACCAGTGCCAACGTTTTATGGGATATACAAGAAGAAATCATCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 TTTGGGGTGTTCTTGTCACCAGTGCCAACGTTTTATGGGATATACAAGAAGAAATCATCA 166
Query 121 AAAGGGTTTCAGTCGATACCGTACATATGTGCACTAGCAAGTGCAACTCTTCTTCTCTAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 AAAGGGTTTCAGTCGATACCGTACATATGTGCACTAGCAAGTGCAACTCTTCTTCTCTAC 226
Query 181 TACGGAATAATGAAGACACATGCTTATCTCATCATTAGTATTAACACCTTTGGATGTTTC 240
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 227 TACGGAATCATGAAGACACATGCTTATCTGATCATTAGTATTAACACCTTTGGATGTTTC 286
Query 241 ATTGAAATCTCCTACTTGTTTCTCTATATCATTTATGCACCAAGAGAGGCCAAGATATCC 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 287 ATTGAAATCTCCTACTTGTTTCTCTATATCCTTTATGCACCAAGAGAGGCCAAGATATCC 346
Query 301 ACGTTGAAGTTGATAGTGATATGCAACATCGGTGGACTTGGTCTCTTAATTCTTCTAGTC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 ACGTTGAAGTTGATAGTGATATGCAACATCGGTGGACTTGGTCTCTTAATTCTTCTAGTT 406
Query 361 AATCTCTTGGTTCCAAAACAACACCGTGTCTCGACCGTTGGATGGGTTTGTGCTGCTTAC 420
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 407 AATCTTTTGGTTCCAAAACAACACCGCGTCTCGACCGTTGGATGGGTTTGTGCTGCCTAC 466
Query 421 AGTCTCGCCGTCTTTGCTTCTCCCTTAAGCGTCATGAGGAAGGTTATAAAGACAAAAAGT 480
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 467 AGTCTCGCAGTCTTTGCTTCTCCCTTAAGCGTCATGAGGAAGGTTATAAAGACAAAGAGT 526
Query 481 GTGGAGTACATGCCGTTTCTTCTCTCCTTGTCTCTCACTCTTAACGCCGTCATGTGGTTC 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GTGGAATACATGCCGTTTCTTCTCTCCTTGTCTCTCACTCTTAACGCCGTCATGTGGTTC 586
Query 541 TTTTATGGACTTCTTATCAAAGACAAGTTCATCGCTATGCCAAACATTCTCGGTTTTCTA 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 587 TTTTATGGACTTCTTATCAAAGACAAGTTCATTGCTATGCCAAACATTCTCGGTTTTCTA 646
Query 601 TTCGGTGTAGCTCAGATGATACTATACATGATGTATCAAGGTTCCACGAAAACGGATTTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TTCGGTGTAGCTCAGATGATACTATACATGATGTATCAAGGTTCCACGAAAACGGATTTG 706
Query 661 CCAACAGAGAACCAACTTGCAAATAAAACCGATGTAAACGAAGTGCCGATCGTGGCCGTT 720
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 707 CCAACAGAGAACCAACTAGCAAATAAAACCGATGTTAACGAAGTCCCGATCGTGGCCGTT 766
Query 721 GAATTGCCTGATGTGAGATCAGACAATGTTGAAGGATCGGCT-AGGCCAATGAAGTGA 777
||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 767 GAATTGCCTGATGTGGGATCAGACAATGTTGAAGGATCGG-TGAGGCCAATGAAGTGA 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5