BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321611

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G10990.1 | Symbols:  | pseudogene, hypothetical protein | ch...   289    8e-78


> AT2G10990.1 | Symbols:  | pseudogene, hypothetical protein | 
chr2:4339443-4340424 FORWARD LENGTH=982
Length=982

 Score =  289 bits (156),  Expect = 8e-78
 Identities = 186/200 (93%), Gaps = 4/200 (2%)
 Strand=Plus/Plus

Query  1    ATGAAGGCTCTCCAAGTGCTATGTAAGACTAAAACCTTCTGTCTCGAATCACAC-TCTGA  59
            |||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| || ||
Sbjct  42   ATGAAGGCTCTCCAAGTGCTATGTAAGACTGAAACCTTCTTTCTTGAATCACACTTC-GA  100

Query  60   GAAATAGATCACGCGATCAGATTTGCGTTTGTGGCAATGTGACGGAATGTACAAGATTCA  119
            ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  101  GAAATGGATCGCGCGATCAGATTTGCGTTTGTGGCAATATGACGGAATGTACAAGATTCA  160

Query  120  AATGCAGCAGCAACT-TCATGGATTTGTGTTAACCAATTTCTATAGAAAGGCCATTTGGA  178
            |||||| |||||| | ||||||||||||| ||||||||| || |||||||||||||||||
Sbjct  161  AATGCACCAGCAA-TCTCATGGATTTGTGCTAACCAATTCCTGTAGAAAGGCCATTTGGA  219

Query  179  CGGCTGCAAAACGGCGTTAA  198
            ||||||||||||||||||||
Sbjct  220  CGGCTGCAAAACGGCGTTAA  239



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8802736425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5