BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321615
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30590.1 | Symbols: | RNA polymerase I specific transcripti... 920 0.0
AT2G39240.1 | Symbols: | RNA polymerase I specific transcripti... 872 0.0
> AT1G30590.1 | Symbols: | RNA polymerase I specific transcription
initiation factor RRN3 protein | chr1:10835794-10840005
REVERSE LENGTH=2303
Length=2303
Score = 920 bits (498), Expect = 0.0
Identities = 995/1221 (81%), Gaps = 90/1221 (7%)
Strand=Plus/Plus
Query 324 TGTAATGTATGCATTGCTGGACCTAATCGTATCACTGGCCACTACTAGTGGAAAGTATCT 383
||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 612 TGTAATGGATGCATTGGTGGACCTAATCATATCACTGGCCGCTACTAGTGGAAAATATCT 671
Query 384 -GATCTCTTGTTTAAATATGCTCGT-----A--TC--T-AATTTAC-GTT-CGC---AA- 426
|||| ||||||| ||||||||||| | || | || ||| || || ||
Sbjct 672 GGATC-CTTGTTTGAATATGCTCGTAAGAAATTTCAGTCAACCTACTTTTAAGCATAAAG 730
Query 427 CCCCGCATACTC-A--A--CAATAAGGA-GCAGGAAGTTCTTTCC-CGGGTGCACGCAGC 479
| || || | | | ||| || || ||||||||||| ||| |||||||| |||||
Sbjct 731 TTTCACAAACCCAATTAGTCAA-AAAGATGCAGGAAGTTC-ATCCACGGGTGCATGCAGC 788
Query 480 TCTTCACAAAATTTCGTATTTAGTTCCCCTTGCTCCCT-CAATATTACTGCCCATACTCG 538
|||||||| ||||| |||||| |||| |||||||||| ||| ||| || | ||||| |
Sbjct 789 CCTTCACAAGATTTCTTATTTAATTCCTCTTGCTCCCTGGAAT-TTAGTGTCTATACTTG 847
Query 539 CCCAGGGA-ATGCCTAGCGTAGACGACAAA-GA-CCATCTTGTAGTGCCATATGTGGAGA 595
| || | | |||| || | ||| | ||| || || || | ||||| |||||||||| |
Sbjct 848 CGCA-GAACATGCGTAAAATTGAC-AAAAAGGACCCTTC-TATAGTGACATATGTGGATA 904
Query 596 ACTTGTTGAAGTTGGAGAACAGCTCAATCATCGGAAAAGTTGTTGGCAACGGGATTCTTA 655
|| |||||| ||||||||| ||||| | |||||| |||||||||||| || ||||||||
Sbjct 905 ACCTGTTGAGGTTGGAGAATAGCTC-A--ATCGGAGAAGTTGTTGGCAGCGTGATTCTTA 961
Query 656 GGGTTGTAATGGAGAGGTTGCGAGATCTCGATTTGAAGATTGGGTGGGATGATATACTCC 715
| | |||||||||||| ||| |||| | |||||| | | || ||||| |
Sbjct 962 TGATGGTAATGGAGAGGATGCTAGATTTAGATTTG--G--TAAGT-GGATG------T-- 1008
Query 716 AAGATGACTCCACCAT--AGCCATGTTTGATATGGAACTTGACCTTGCAGTTGAAGGCAC 773
|||||||| | || || ||||||||||||||||||||| |||||||||| ||||
Sbjct 1009 --GATGACTCTA--ATGGAGGCATGTTTGATATGGAACTTGAAGATGCAGTTGAAAGCAC 1064
Query 774 TACCAATGAAGGAGAGGAGTTTTCAGTTCGGTCTCTAAATC--AA-A----A--TGGAAA 824
|| ||||||||||| |||||| |||| || ||||||| | || | | ||||||
Sbjct 1065 TATGAATGAAGGAGACGAGTTTCCAGTGGGGGCTCTAAAACAAAATACTTCAGGTGGAAA 1124
Query 825 TGTAGTCTCT-AAATCGTTGGACGATTTGATGGTCCTATCTTTTCATCATCTTGAATTCT 883
|||||||||| || | ||||||| | ||||||||||||| |||||||||||| |||| ||
Sbjct 1125 TGTAGTCTCTGAACT-GTTGGACAAATTGATGGTCCTATTTTTTCATCATCTAGAATCCT 1183
Query 884 GCCAAGA-TGCTGGTCGTCTGGATGAGGTGTTTGAAAAT-CTGTTCGTGTCGTTTGAGAA 941
| ||| | | ||| |||| |||||||||| |||| |||| || || |||||| |||||
Sbjct 1184 GTCAAAACT-CTGATCGTTTGGATGAGGTATTTG-AAATCCTCTTTAAGTCGTTCGAGAA 1241
Query 942 CTTA-ATTCTGAACACGCaaaaaacaaaaaTTTCACAGTTCCTGATGTTCTATGCGTGCT 1000
| || ||||||||||| | ||||||||| |||||||||| |||||||||||||| ||||
Sbjct 1242 C-TATATTCTGAACACATACAAAACAAAATTTTCACAGTTTCTGATGTTCTATGCATGCT 1300
Query 1001 CACTAGATCCT-AAAAGTTGTGGTGTGAAATTTGCCAGTAAGCTGTTGGACATATTTCTC 1059
||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1301 CACTAGATCCTGAAAA-TTGTGGTGTGAGATTTGCCAGTAAGCTGTTGGACATATATCTC 1359
Query 1060 TCCAGCAACAAACATCAAGTTACTAGGACGAATGCAGTGGCTTATCTAGCTAGCTACTTG 1119
|||||||||| | || | ||||||||| || |||||||||||||||||||||||| |||
Sbjct 1360 TCCAGCAACACATGTCGACTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTATTTG 1419
Query 1120 GCTCGTGCAAAGTTTTTGCCTACTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGAG 1179
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1420 TCTCGTGGAAAGTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGAC 1479
Query 1180 GATTGTGCGGATTACTGCAGAACATGCAATGATGATGCT-AGGCCTGAAGAACATCAAGA 1238
|| |||||||| || ||| |||||||||||||||||| | | ||| |||| ||||||||
Sbjct 1480 GAGTGTGCGGAATATTGCGGAACATGCAATGATGATG-TGAAGCCAGAAGCACATCAAG- 1537
Query 1239 T-TTTTATTCAGGATGTCAGGCAATCTTGTATGTGCTATGCTTCCGAATGAGATCAATCC 1297
| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1538 TGTTCTATTCTGGATGTCAGGCAATCTTGTATGTGCTATGCTTCCGAATGAGATCCATAG 1597
Query 1298 TAGCTG-TTCCTCGCTTCCTATCGCAGCTTACACCATTGGAGTCGGTTTTTATCTCACAA 1356
| | | |||||||||| | ||||||| ||| | |||||||||| |||| |||||||||
Sbjct 1598 TGGA-GATTCCTCGCTTTCAATCGCAGTTTAGATCATTGGAGTCAATTTT-ATCTCACAA 1655
Query 1357 ACTAGACCC------G-TGTGCCTTCCATCTGTAGTTTCTGAGTTCCTTAAACAAGCCAA 1409
|||| |||| | |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1656 ACTAAACCCACTACTGGTGTGTCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGCCAA 1715
Query 1410 AGCTGGTGGTATGATCATTGTCTCGGAAGCCTTCATTTTTGATGACCTACCCGAGTCTGA 1469
|||||||||| || |||||||||| ||| |||||||||| |||||||||| |||||||||
Sbjct 1716 AGCTGGTGGTCTGTTCATTGTCTCAGAATCCTTCATTTTCGATGACCTACACGAGTCTGA 1775
Query 1470 GCTCTCTCGTGCTTTTGGTGG 1490
|||||||||||||||||||||
Sbjct 1776 GCTCTCTCGTGCTTTTGGTGG 1796
> AT2G39240.1 | Symbols: | RNA polymerase I specific transcription
initiation factor RRN3 protein | chr2:16384786-16387827
REVERSE LENGTH=1722
Length=1722
Score = 872 bits (472), Expect = 0.0
Identities = 617/685 (90%), Gaps = 18/685 (3%)
Strand=Plus/Plus
Query 827 TAGTCTCTAAATCGTTGGACGATTTGATGGTCCTATCTTTTCATCATCTTGAATTC-TGC 885
|||| ||||||| |||||||||||| |||||| ||||||| |||||||| || || ||
Sbjct 776 TAGTTTCTAAATTGTTGGACGATTTAATGGTCGAATCTTTTAATCATCTT-AAATCTTGT 834
Query 886 CAAGATGCTGGTCGTCTGGATGAGGTGTTTGAAAATCTGTTCGTGTCGTTTGAGAACTTA 945
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 835 CAAGATGCTGGTCGTCTGGATGAGGTGTTTGAAAATCTCTTCGAGTCGTTTGAGAACTTA 894
Query 946 ATTCTGAACACGCaaaaaacaaaaaTTTCACAGTTCCTGATGTTCTATGCGTGCTCACTA 1005
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 895 ATTCTGAACACGCAAAAATTAAAATTTTCACAGTTCCTGATGTTCTATGCGTGCTCACTA 954
Query 1006 GATCCT-AAAAGTTGTGGTGTGAAATTTGCCAGTAAGCTGTTGGACATATTTCTCTCCAG 1064
|||||| |||| |||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 955 GATCCTGAAAA-TTGTGGTGTGAAGTTTGCCAGTAAGCTGTTGGAAAAATTTCTCTCCAG 1013
Query 1065 CAACAAACA-TCAAGTTACTAGGACGAATGCAGTGGCTTATCTAGCTAGCTACTTGGCTC 1123
|||||| || ||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1014 CAACAA-CAATCAAGTTACTAGGACGAATGCAGTGACATATCTAGCTAGCTACTTGGCTC 1072
Query 1124 GTGCAAAGTTTTTGCCTACTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGAGGATT 1183
||||||| |||||| || |||||||||||||||||||||| |||||||||||||| || |
Sbjct 1073 GTGCAAATTTTTTGTCTGCTTCTTTTGTGGCTAGCATGTTAAAAAGATTGGTGGATGAGT 1132
Query 1184 GTGCGGATTACTGCAGAACATGCAATGATGATGCTAGGCCTGAAGAACATCAAGATTTT- 1242
|||| ||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 1133 GTGCTGATTATTGCAGAACATGCAATGATGATGCTAGGCCTGAAGTACACCAAG-TTTTC 1191
Query 1243 TATTCAGGATGTCAGGCAATCTTGTATGTGCTATGCTTCCGAATGAGATCAATCCTAGCT 1302
||||||||||||||||| || || || ||||||||||| |||||||||||||||||||
Sbjct 1192 TATTCAGGATGTCAGGCCATTTTATACGTGCTATGCTTTCGAATGAGATCAATCCTAGAG 1251
Query 1303 GTTCCTCGCTTCCTATCGCAGCTTACACCATTGGAGTCGGTTTTTATCTCACAAACTAGA 1362
||||||| ||||| ||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1252 GTTCCTCACTTCCAATCACAGCTTACACCATTGGAGTCAGTTTTG-TCTCACAAACTAGA 1310
Query 1363 CCCG-TG----T--GCCTTCCATCTGTAGTTTCTGAGTTCCTTAAACAAGCCAAAGC-TG 1414
|||| || | ||||| |||||||||||||||||||||||| |||||||||||| ||
Sbjct 1311 CCCGCTGAGGGTATGCCTTTCATCTGTAGTTTCTGAGTTCCTTATACAAGCCAAAGCCTG 1370
Query 1415 GTGGTATGATCATTGTCTCGGAAGCCTTCATTTTTGATGACCTACCCGAGTCTGAGCTCT 1474
||| || |||||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 1371 -TGGCCTGTTCATTGTCTCCGACGCCTTCATTTTTGATGACCTATCCGAGTCTGAGCTCT 1429
Query 1475 CTCGTGCTTTTGGTGGATTCTTCCC 1499
|||||||||| ||||| ||||||||
Sbjct 1430 CTCGTGCTTTAGGTGGCTTCTTCCC 1454
Score = 859 bits (465), Expect = 0.0
Identities = 691/794 (87%), Gaps = 40/794 (5%)
Strand=Plus/Plus
Query 1 ATGGGAGCAGAAGAAGAAGTGGACAATGCTGAGTTAAGCGACAAAGCTTTGGTGT-TAGC 59
|||||||| |||||||||||| | |||||| |||||||||||||||||||||| | ||
Sbjct 1 ATGGGAGC---AGAAGAAGTGGAGACTGCTGACTTAAGCGACAAAGCTTTGGTGTCT-GC 56
Query 60 CATTAGAGAGGTCCTTGCATCTGTCCAAAGT-GTGAGT--C-TTGC-ACA-AATGGAGAC 113
||||||||||||||||||||||| ||||||| | || | | | | | | ||| ||| |
Sbjct 57 CATTAGAGAGGTCCTTGCATCTGCCCAAAGTGGGGA-TACCGAT-CAATATAAT-GAG-C 112
Query 114 ACCGATCAATATAATGTACAT--TAAA-AAGAAATCTGATGGCCATGCTGTGGCACAGAA 170
| ||| | |||||||||| ||| |||||||||| || | ||||| ||||||||
Sbjct 113 -TTGTTCAGT-TAATGTACATCAAAAAGAAGAAATCTGGTGACGATGCTATGGCACAGCC 170
Query 171 AGAGGTGCCTGAAGATGTCGATGTTGTGGCTCAGCGAGAGACACTCTTGAAAATTCTATC 230
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 AGAGGTGCCTGATGATGTCGATGTTGTGGCTCAGCGAGAGACACTCTTGAAAATTCTATC 230
Query 231 ACGCTCTGTTGTTTGCTTAGATGAAGTTCACCATAACCGGCTTCTTGTACTTATTCTTGG 290
|| |||||||| |||||||||||| ||||||||||||| |||||| ||||||||||||
Sbjct 231 ACACTCTGTTGCTTGCTTAGATGACGTTCACCATAACCACCTTCTTCAACTTATTCTTGG 290
Query 291 GACGAGAATTTGGGATCACATACCTAATGTAAATGTAATGTATGCATTGCTGGACCTAAT 350
||||||||||||||||||| ||||||||||| | | | |||||||||||||| ||||
Sbjct 291 AACGAGAATTTGGGATCACAAACCTAATGTAA-T--A-T--ATGCATTGCTGGACTTAAT 344
Query 351 CGTATCACTGGCCACTACTAGTGGAAAGTATCTGATCTCTTGTTTAAATATGCTCGTATC 410
| |||||||||||||||||||||||||| |||||| |||||||||| ||| |||||| ||
Sbjct 345 CATATCACTGGCCACTACTAGTGGAAAGCATCTGAGCTCTTGTTTAGATACGCTCGTCTC 404
Query 411 TAATTTACGTTCGCAACCCCGCATACTCAACAATAAGGA-GCAGGAAGTTCTTTCCCGGG 469
||||||||||||||||||||||| |||| |||||||| | || ||||||||||||| |||
Sbjct 405 TAATTTACGTTCGCAACCCCGCAAACTCGACAATAAG-ATGCTGGAAGTTCTTTCCAGGG 463
Query 470 TGCACGCAGCTCTTCACAAAATTTCGTATTTAGTTCCCCTTGCTCCCTCAATATTACTGC 529
||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 464 TGCACGCAGCTCTTCACAAGATTTCTTATTTAGTTCCCCTTGCTCCCTCTATATTACTGC 523
Query 530 CCATACTCGCCCAGGGAATGCCTAGCGTAGACGACAAAGA-C-CAT-C---TTGTAGTGC 583
|||||||||||||| | |||||||||||| ||||||||| | | | | |||||||||
Sbjct 524 CCATACTCGCCCAGAGTATGCCTAGCGTACACGACAAAGCTCGCTTGCAGGTTGTAGTGC 583
Query 584 CATATGTGGAGAACTTGTTGAAGTTGGAGAACAGCTCAATCATCGGAAAAGTTGTTGGCA 643
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 CATATGTGAAGAACTTGTTGAAGTTGGAGAACAGCTCAATCATCGGAAAAGTTGTTGGCA 643
Query 644 ACGGG-ATTCTTAGGGTTGTAATGGAGAGGTTGCGAGATCTCGATTTGAAGATTGGGTGG 702
| || ||||||| | | || |||| |||||| ||||||||||||| | |||||| |||
Sbjct 644 A-GGATATTCTTATGATGGTGATGGGGAGGTTCCGAGATCTCGATTCGGAGATTGAGTGC 702
Query 703 GATGATA-TACTCCAAGATGACTCCAC-CATAGCCATGTTTGATATGGAACTTGACCTTG 760
||||||| | |||||| ||||||||| | |||| ||||||||||||||||||||| |||
Sbjct 703 GATGATAAT-CTCCAAAATGACTCCAGTC-TAGCAATGTTTGATATGGAACTTGACGTTG 760
Query 761 CAGTTGAAGGCACT 774
||||||||||||||
Sbjct 761 CAGTTGAAGGCACT 774
Score = 228 bits (123), Expect = 2e-58
Identities = 165/185 (89%), Gaps = 3/185 (2%)
Strand=Plus/Plus
Query 1571 CGGAAGTCATAGTGTATGGAGATACAGAGAGTGAGGAGGATTGTGATGATGATGATGTTG 1630
||||||| | |||||||||||||||||| | ||||||||| | ||||||||| ||||
Sbjct 1541 CGGAAGTGACAGTGTATGGAGATACAGACAATGAGGAGGA--CT-CTGATGATGACGTTG 1597
Query 1631 TTCTTGATAACGAGGTGAACAAGATGTCTACAACTCCTACACACTCCTTCATGCGCGAAA 1690
|| |||||||||| ||||||||||||||| |||||||| |||||| |||||| |||||
Sbjct 1598 ATCCTGATAACGAGATGAACAAGATGTCTATAACTCCTAAACACTCAGTCATGCACGAAA 1657
Query 1691 CAGAGAGACTCTTGAAGATGCCTTCGAGGATCAGTCCATCAACTAGTCCTCGTGAATCTC 1750
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1658 CAGAGAGACTCCTGAAGATGCCTTCGAGGATCAGTCCATCAACTAGTCCTCGTGAATCCC 1717
Query 1751 TCTGA 1755
|||||
Sbjct 1718 TCTGA 1722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86796742305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5