BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321616
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39250.1 | Symbols: SNZ | Integrase-type DNA-binding superfa... 1404 0.0
> AT2G39250.1 | Symbols: SNZ | Integrase-type DNA-binding superfamily
protein | chr2:16388886-16391073 REVERSE LENGTH=1244
Length=1244
Score = 1404 bits (760), Expect = 0.0
Identities = 910/980 (93%), Gaps = 19/980 (2%)
Strand=Plus/Plus
Query 1 ATGTTGGACCTCAACCTCGGAATCTTGTCGACACACAACGAAGACGAAGATTGCAAAGTA 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 143 ATGTTGGACCTCAACCTCGGAATCTTGTCGACACACAACGAAGATGAAGATTGCAAAGTA 202
Query 61 CCAACCTCCATCGTCCA-TCAAGAAGAAGATTCCATTAATCCCTCAAACGACAACTTGTC 119
||||| |||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 CCAACTTCCATC-TTCATTCAAGAAGAAGATTCCATTAATCCCTCAAACGACAACTTGTC 261
Query 120 TTTAATTACATTCGGAATCCTTAAAAGAAA---AGAAGA-GGTT-GAAAt---cct--tc 169
||| |||||||| |||||||||||| |||| ||| | || | ||| ||
Sbjct 262 TTTGATTACATTTGGAATCCTTAAACGAAACGTCGAA-ATCCTTCCTCCTCCCCCTCCTC 320
Query 170 ctcctcctcctcctcct-c--cGGAGAGTGTGTTATCCGGCGCCGGAAACGAGTGGTTGA 226
||||||||||||||||| | |||| | || | |||||| ||||||| |||||||||
Sbjct 321 CTCCTCCTCCTCCTCCTCCTTCGGAAAATGAACTCTCCGGCCCCGGAAATGAGTGGTTGG 380
Query 227 ATCTGTCGTCGATGCAAAGAAATAAACAAGAAATGTTGGTGATGAAGAAGAAGAGCCGAC 286
|||| |||||||||||||||||||||||||||| ||||||||||||||| || || ||||
Sbjct 381 ATCTTTCGTCGATGCAAAGAAATAAACAAGAAACGTTGGTGATGAAGAAAAAAAGTCGAC 440
Query 287 GTGGTCCAAGATCCAGAAGCTCCCATTATCGTGGCGTCACCTTTTACCGTCGAACTGGCC 346
|||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 441 GTGGCCCAAGATCAAGAAGCTCTCATTATCGTGGCGTTACCTTTTACCGTCGAACCGGCC 500
Query 347 GTTGGGAATCTCATATTTGGGACTGTGGAAAACAGGTTTATTTGGGTGGTTTCGACACAG 406
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 501 GTTGGGAATCTCATATTTGGGACTGTGGAAAACAAGTTTATTTGGGTGGTTTCGACACAG 560
Query 407 CCTACACAGCCGCAAGAGCGTACGACCGAGCTGCTATCAGATTCCGGGGACTCCAAGCAG 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CCTACACAGCCGCAAGAGCGTACGACCGAGCTGCTATCAGATTCCGGGGACTCCAAGCAG 620
Query 467 ATATCAATTTTATCGTGGATGATTACAAACAGGACATTGAAAAGATGAAGAATTTAAGCA 526
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 621 ATATCAACTTTATCGTGGATGATTACAAACAAGACATTGAAAAGATGAAGAATTTAAGCA 680
Query 527 AAGAAGAGTTTGTGCAATCTCATAGACGAGCGAGTGCAAGCTTAGCAAGAGGAGGTTCTA 586
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 681 AAGAAGAGTTTGTGCAATCTCTTAGACGAGCGAGTGCAAGCTTAGCAAGAGGAGGTTCTA 740
Query 587 AATACAAAAACACCCATACGAGAAATGATCACATCCATCTCTTCCAAAACAGGGGATGGA 646
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 741 AATACAAAAACACCCATATGAGAAATGATCACATCCATCTCTTCCAAAACAGGGGATTGA 800
Query 647 ATGCAGCAGCAGCAAAATGCAATGAGATAAGAAAGATGGAAGGGGATATTAAGTTGGGTG 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 ATGCAGCAGCAGCAAAATGCAATGAGATAAGAAAGATGGAAGGGGATATTAAGTTGGGTG 860
Query 707 CCCATAATAAAGGAAATGAGCACAACGATCTCGAGCTAAGTCTTGGAATATCTTCATCGT 766
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 861 CCCATAGTAAAGGAAATGAGCACAACGATCTCGAGCTAAGTCTTGGGATATCTTCATCGT 920
Query 767 CaaaaaaaaGAATTTTGGAACCAGCAGATTATTACATGGGTTTGAATCGATCTGTGATGA 826
||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 921 CAAAAGTTAGAATTTTGGAACCAGCAGATTATTACATGGGTTTGAATCGATCGGTGACGA 980
Query 827 GTTTGCATGGGAAGCCGTTGCCGGTATATCTACCGATCACAGAAATGAAACCGTTAAAGA 886
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 981 GTTTGCATGGGAAGCCGTTGCCGGGATATCTACCGATCACAGAAATTAAACCGTTAAAGA 1040
Query 887 CAGTTGTAGCATCATCAGGATTCCCTTTCATTGCCATGAACAATTCTTCTTCTTTGACC- 945
|||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||
Sbjct 1041 CAGTTGTAGCATCATCAGGATTCCCTTTCATTACCATGATCAATCCTTCTTCTTTGTCCT 1100
Query 946 -A-CTTGTTTTGATCCATGA 963
| |||||||||||||||||
Sbjct 1101 TATCTTGTTTTGATCCATGA 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5