BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321630
Length=2160
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39435.1 | Symbols: | Phosphatidylinositol N-acetyglucosami... 1836 0.0
AT2G39440.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribonucle... 449 4e-125
AT2G39445.1 | Symbols: | Phosphatidylinositol N-acetylglucosam... 374 3e-102
AT1G61280.1 | Symbols: | Phosphatidylinositol N-acetylglucosam... 211 2e-53
> AT2G39435.1 | Symbols: | Phosphatidylinositol N-acetyglucosaminlytransferase
subunit P-related | chr2:16464718-16466871
REVERSE LENGTH=1632
Length=1632
Score = 1836 bits (994), Expect = 0.0
Identities = 1344/1500 (90%), Gaps = 76/1500 (5%)
Strand=Plus/Plus
Query 696 ATCTTTTAG-TGATAAAGATTACTTCGTTTC----TATTCT-G--G-GT----GTCTCAA 742
||||||| | |||||||||||||||| |||| |||||| | | || |||||||
Sbjct 86 ATCTTTT-GATGATAAAGATTACTTCATTTCTGGTTATTCTCGAAGAGTAGAGGTCTCAA 144
Query 743 AAGAAATGGAGTCTAAGGAAATTAGATCCTCCTCCGTGATTGAGAGATCGATGCGTTTTA 802
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 145 AAGAAATGGAGTCTAAGGAAATTAGATCCTCCTCTGTCTTTGAGAGATCGATGCGTTTTA 204
Query 803 ATGGACTATTTCAGCCTCTGCATCAAGATAAGCTGAGAGTTGTTAAGAAACAG----AAC 858
|||||| | || | |||||||||||||||||||||| |||||||| |||
Sbjct 205 ATGGAC----T----CT-T---TCAAGATAAGCTGAGAGTTGTTGAGAAACAGAATCAAC 252
Query 859 CAAC-AAA-----T--CCAAAAGGAGTCCATTTCTGGTTTCACAGTGATTCCAACGCAGG 910
|| | ||| | |||||||||||| | ||||||||||||||||||||||||| ||
Sbjct 253 CACCAAAACGGTTTAACCAAAAGGAGTCTAATTCTGGTTTCACAGTGATTCCAACGAAGC 312
Query 911 AACTTTGTCGAGTTTATCTCCGGAAACCCAATTTGTTGGCTTCCAAGGGTATAATTGATG 970
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 313 AACTTTGTCGAGTTTATCTCCAGAAACCGAATTTGTTGGCTTCCAAGGGTATAATTGATG 372
Query 971 CACTAGCTAAGCCTCCTCATAGGAATTATGGTAGGAG--AT-ATCATCAAAACTTGAAGT 1027
|||||||||||||||||||||||| || ||||||||| || |||| |||||||| ||||
Sbjct 373 CACTAGCTAAGCCTCCTCATAGGATTTTTGGTAGGAGATATGATCAGCAAAACTTCAAGT 432
Query 1028 CAAAGTTGAGACATCATCACACAACAAGTGTTGATACTCTGAAACACAAATTCCGG-AAG 1086
||||| ||||||||| ||||||||||||| ||||| |||||||||||||||| || |||
Sbjct 433 CAAAGCTGAGACATCTTCACACAACAAGTATTGATCCTCTGAAACACAAATT-TGGCAAG 491
Query 1087 AAAGAGAATTCTCTGAGATATTTCACTCCTCTTGGTTTCGGTAGTGGTTCTTGTTTAGGA 1146
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 492 GAAGAGAATTCTCTGAGATATTTCACTCCTCTTGGTTTCAGTAGTGGTTCTCGTTTAGGA 551
Query 1147 GATAGGAAGAAAGTGAAAGACCTTT-CTTT--TGAGGAGAAACCAAAGGAAATGAAGAAA 1203
||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 552 GATAGGAAGAAAGGGAAAGACCTTTCCTTTCAGGAGGAGAAACCAAAGGAAATGAAGAAA 611
Query 1204 CTTTTTGATGGTACTACATTTGGTCAGAAGAAGGATAGAGTTGTGAGAGAAGTTAAATCC 1263
| |||| | | | |||||||||||| ||||||||||||||||||||||||
Sbjct 612 C--TTTG-T-G------A-----TCAGAAGAAGGAGAGAGTTGTGAGAGAAGTTAAATCC 656
Query 1264 AGTTTGATGGTTAGTACATCTAGGGACAAAGTTGCTGCAGATGTGAAGTTCAAGGATTTA 1323
|||||| |||||||||| |||||||||| |||||| |||||||||||||||| |||||||
Sbjct 657 AGTTTGGTGGTTAGTACTTCTAGGGACAGAGTTGCAGCAGATGTGAAGTTCAGGGATTTA 716
Query 1324 TCTTCTTCAGGTTTCATTAGCAAGGATAAAAATGATGAGTCATTAGATTGCTCCAATGCA 1383
|||||||| ||||||||| |||||||| ||||| ||||||| ||||||||||| ||| |
Sbjct 717 TCTTCTTCTGGTTTCATTTCCAAGGATATAAATGCTGAGTCAGTAGATTGCTCCCATGGA 776
Query 1384 TCTCTGGAATGTCAGACGAACTCGGAAGAAGCTCATCAACCTAGTCCTGTTTCTGTTCTG 1443
|||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 777 TCTCCGGAATGTCAGACGAATTCGGAAGATGCTCATCAACCTAGTCCTGTTTCTGTTCTG 836
Query 1444 GAGCCAATGTTTTACGAAGATATCTTAGACGACAGTGAAGATATCTTAGATGACAGCGAA 1503
|||||||||||||| ||||||| ||||||||| ||||||||||| ||||| ||||| |||
Sbjct 837 GAGCCAATGTTTTATGAAGATAACTTAGACGATAGTGAAGATATTTTAGACGACAGTGAA 896
Query 1504 GATCTTCCTTATCCCGATTTTCAAAGTCTAGAGAAACAGCTGGAAACCCTGAAATCTGAA 1563
||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 897 GATCTTCCTTATCCCAATTTTCTAAGTCTAGAGAATCAGCTGGAAACCCTGAAATCTGAA 956
Query 1564 TCTGAGAGTTATTCAGATGGGAGTGGGATGGAAGTATCAAGCGATGAGGAGTCCGTTCTT 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 957 TCTGAGAGTTATTCAGATGGGAGTGGGATGGAAGTATCAAGCGATGAGGAGTCTGCACTT 1016
Query 1624 GATTCTGAAACCAAAGAAAGCAAGGACATT-ACACCAATCGGGTTCTTGGATACCCAAGA 1682
||||||| || ||||||||||||||| | | | |||||| ||||||||||||||||||||
Sbjct 1017 GATTCTGCAATCAAAGAAAGCAAGGAAAGTGA-ACCAATTGGGTTCTTGGATACCCAAGA 1075
Query 1683 AAGCAGGGATTCTTCTTACATTGATGATATATCGGCTGAAGTTGTACTTGGGGACAAGAA 1742
|||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 1076 AAGCAGGGATTCTTCTTACATTGATGATATCTTGGCTGAAGTTTTACTTGGGGACAAGAA 1135
Query 1743 TTGGGTTCCTGGCAAACGTGATTCACTGGATTTAGTCATCATCCCCAAGATCTTTGAGAA 1802
||| |||||||||||||| | | |||||||||||| |||||||||||| |||||
Sbjct 1136 TTGCGTTCCTGGCAAACG-G-------G-ATTTAGTCATCACCCCCAAGATCTTCGAGAA 1186
Query 1803 ACTGGAGAAGAAGTATTACGCAGAGACATCTTGGAAAAGATCTGAAAGAAAGATTTTGTT 1862
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1187 ACTGGAGAAGAAGTATTACACAGAGACATCTTGGAAAAGATCTGACAGAAAGATTTTGTT 1246
Query 1863 TGACAGAGTCAATTCAGGTCTTGTAGAGATTCTAGAATCCTTTTCAGCTACACCAACATG 1922
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 TGACAGAGTCAATTCAAGTCTTGTAGAGATTCTAGAATCCTTTTCAGCTACACCAACATG 1306
Query 1923 GAAGAAACCCGTTTCTAGAAGGCTTGGCACCACGCTAAGCACATGTGGACTGAAACAAGA 1982
|||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1307 GAAGAAACCCGTTTCTAGGAGGCTAGGCACTGCGCTAAGCACATGTGGACTGAAACAAGA 1366
Query 1983 ACTCTGGAAAGTACTTGCCAGGCAAGAGAAGCGAGCaaa-aaaaGAATCATTGGCTAAAG 2041
|||||||||||||||| | ||||||||||||||| | || |||| |||||||||| ||||
Sbjct 1367 ACTCTGGAAAGTACTTTCTAGGCAAGAGAAGCGATCCAAGAAAA-AATCATTGGCCAAAG 1425
Query 2042 TGCCAGTCATAGACATTGATGAGTGGTTAGAACTCGAAGCTGATGATGAGTCAGTGGTTT 2101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 TGCCAGTCATAGACATTGATGAGTGGTTAGAACTCGAAGCTGATGATGAGTCAGTGGTTT 1485
Query 2102 GTGAATTAGAAAGCT-TGATAGTAGATGAGTTGTTGGCTGAGGTTGTCAGCTTCATGTAG 2160
||||||||||||| | ||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1486 GTGAATTAGAAAG-TATGATAGTGGATGAGTTGTTGTCTGAGGTTGTCAGCTTCATGTAG 1544
> AT2G39440.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribonuclease
H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:16467855-16469628
REVERSE LENGTH=1020
Length=1020
Score = 449 bits (243), Expect = 4e-125
Identities = 271/285 (95%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 382 GATGTTGAAATCGATGGAGTAAGAACTGAAGAAGCTCATTTCAGAGGAAGGAAGTTGCAG 441
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 305 GATGTTGAAATCGATGGAGTAAAAACGGAAGAAGCTCATTTCAGAGGAAGGAAGTTGCAG 364
Query 442 GGAGCAACTATCTCACTTCCTAGTGGCTATTCTGGCTTTGTGCTTGGACAAGCGAGTAAC 501
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 365 GGAGCAACTATCTCACTCCCTAGTGGCTATTCTGGCTTTGTGCTTAGACAAGCGAGTAAC 424
Query 502 CTGAATGCTAATGGAAAGAGAAAAGCTTCTATGCCCGCAGAAGAGAACCAGTGTTGGGAA 561
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 425 TTGAATGCTAATGGAAAGAGAAAAGCTTCTATGCCCACAGAAGATAACCAGTGTTGGGAA 484
Query 562 GTGAAGGCCAAATTCGACAACCTGACTTATTGGAATCACGATAGTCTTCCTTCAAAGGAC 621
|||||||| |||||| | |||||||| || ||||||||||||||||||||||||||||||
Sbjct 485 GTGAAGGCGAAATTCAATAACCTGACATACTGGAATCACGATAGTCTTCCTTCAAAGGAC 544
Query 622 GATACTTTCTTACGTTCTTTTCATTGGTTTAGCATTGCAGAAGCG 666
||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 545 GATACTTTCTTTCGCTCTTTTCATTGGTTTAGCATTGCAGAAGCG 589
Score = 180 bits (97), Expect = 6e-44
Identities = 111/118 (94%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 227 TTAGAGCTGCTGCTGATGAAAACTCGATTGCGGATCTCAGGAGTCAAGTTCACCAGCTCC 286
||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 183 TTAGAGCTGCTGCAGATGAAAACTCCATTGTGGATCTCAGCAGTCAAGTTCACCAGCTCC 242
Query 287 CTTGCTGCATTAGATTTGATGGTCCTGCTGATGTTTCCCACTATTTCAAGCCTCAATC 344
||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||
Sbjct 243 CTTGCTGCATTAGATTTGATGGTCCTGTTGAAGTTTCCCACTATTTCAAGCCTAAATC 300
> AT2G39445.1 | Symbols: | Phosphatidylinositol N-acetylglucosaminyltransferase,
GPI19/PIG-P subunit | chr2:16470025-16471246
REVERSE LENGTH=667
Length=667
Score = 374 bits (202), Expect = 3e-102
Identities = 217/224 (97%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 1 ATGCCGACGTATTTGGTGGTGACCT-TGATGTTAGCTTTGGCTTTTTACATTGGTCTCAA 59
||||| ||||||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 437 ATGCCAACGTATTTGATGGTGA-CTCTGATGTTAGCTTTGGCTTTTTACATTGGTCTCAA 495
Query 60 CTTCATCGCCACTCCACCCCCAACCTCTCTCAATACCTTGTTTGATGAGTACAGTAGAGA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CTTCATCGCCACTCCACCCCCAACCTCTCTCAATACCTTGTTTGATGAGTACAGTAGAGA 555
Query 120 ACCTGGGGAATTTGATGCTGGGATGGAGGAAGGTGAAGACAGGCCTATAGATCCAATCTC 179
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 ACCTGGTGAATTTGCTGCTGGGATGGAGGAAGGTGAAGACAGGCCTATAGATCCAATCTC 615
Query 180 TGACATTGATATTACAAGAATCAATGATCTTATGTTCAATTCAA 223
||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 616 TGACATTGATATTACAAGAATAAATGATCTTATGTTCAATTCAA 659
> AT1G61280.1 | Symbols: | Phosphatidylinositol N-acetylglucosaminyltransferase,
GPI19/PIG-P subunit | chr1:22603586-22604081
FORWARD LENGTH=414
Length=414
Score = 211 bits (114), Expect = 2e-53
Identities = 192/228 (84%), Gaps = 12/228 (5%)
Strand=Plus/Plus
Query 1 ATGCCGACGTATTTGGTGGTGACCT-TGAT-GTTAGCTTTGGCT-TTTTACATTGGTCTC 57
||||||| ||||| | |||||| || || | | ||||||||| | |||||||||||||||
Sbjct 178 ATGCCGATGTATTCGATGGTGA-CTCTGTTAG-TAGCTTTGG-TGTTTTACATTGGTCTC 234
Query 58 AACTTCATCG-CCACTCCACCCCCAACCTCTCTCAATACCTTGTTTGATGAGTACAGTAG 116
|||||||| | | ||| || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 235 AACTTCAT-GTCTACTTCAAAACCAACCTCTCTCAATACTTTGTTTGATGACTACAGTAG 293
Query 117 AGAACCTGGGGAA-TTTGATGCTGGGATGGAGGAA-GGTGAAGACAGGCCTATAGATCCA 174
|||| | | ||| ||| | || ||| || ||| || ||||||||||| |||||||||
Sbjct 294 AGAAGAT-GTGAATTTTCTTCCTTTGAT-GAAGAATGGGGAAGACAGGCCAATAGATCCA 351
Query 175 ATCTCTGACATTGATATTACAAGAATCAATGATCTTATGTTCAATTCA 222
||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 352 ATCTCTGACATTGATATTACAAGAATCAACGATCTTATGTTCGATTCA 399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107127963030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5