BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321633

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39460.1 | Symbols: ATRPL23A, RPL23A, RPL23AA | ribosomal pr...   765    0.0  


> AT2G39460.1 | Symbols: ATRPL23A, RPL23A, RPL23AA | ribosomal 
protein L23AA | chr2:16474923-16476108 FORWARD LENGTH=795
Length=795

 Score =  765 bits (414),  Expect = 0.0
 Identities = 450/467 (96%), Gaps = 4/467 (1%)
 Strand=Plus/Plus

Query  1    ATGTCTCCGGCTAAAGTTGATACTACCAAGAAGGTTGATCCTAAGGCTAAGGCCTTGAAG  60
            |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct  127  ATGTCTCCGGCTAAAGTTGATACTACCAAGAAGGCTGATCCTAAGGCCAAGGCCTTGAAG  186

Query  61   GCGGCAAAGGCTGTGAAATCTGGTCAAACCTTCAAGAAGAAGGACAAGAAGATTAGGACT  120
            ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| 
Sbjct  187  GCGGCAAAGGCTGTGAAGTCTGGTCAAGCCTTCAAGAAGAAGGACAAAAAGATTAGGACC  246

Query  121  AAGGTCACCTTCCACAGGCCAAAGACTCTTACCAAGCCCAGAGA-TGGTAAGTACCCAAG  179
            |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| 
Sbjct  247  AAGGTCACCTTCCACAGGCCAAAGACTCTTACCAAGCCTAGA-ACTGGTAAGTACCCAAA  305

Query  180  AATCAGCGCTACTCCAAGGAACAAGTTGGATCATTACCAAATCCTTAAGTACCCACTCAC  239
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  306  AATCAGCGCTACTCCAAGGAACAAGTTGGATCACTACCAAATCCTTAAGTACCCACTCAC  365

Query  240  CACTGAATCTGCTATGAAGAAGATTGAAGACAACAACACTCTTGTCTTT-ATTGTTGACA  298
            |||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct  366  CACTGAATCTGCGATGAAGAAGATTGAAGACAACAACACTCTTGT-TTTCATTGTTGACA  424

Query  299  TTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCA  358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  425  TTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCA  484

Query  359  AGAAAGTGAATACACTCATCAGGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACAC  418
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  485  AGAAAGTGAACACACTCATCAGGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACAC  544

Query  419  CAGACTATGATGCTTTGGATGTTGCTAACAAAATTGGCATCATCTAA  465
            ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  545  CAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAA  591



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5