BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321648
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39640.1 | Symbols: | glycosyl hydrolase family 17 protein ... 2342 0.0
> AT2G39640.1 | Symbols: | glycosyl hydrolase family 17 protein
| chr2:16525086-16527012 REVERSE LENGTH=1735
Length=1735
Score = 2342 bits (1268), Expect = 0.0
Identities = 1517/1635 (93%), Gaps = 25/1635 (2%)
Strand=Plus/Plus
Query 1 ATGGCCAAAACGACACGGTTTTTCACTCTCCCTTTCCTCCTCATTGTCGCCGGCGTGATC 60
||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCCAAAACGATTCGGTCTTTCATTCTCCCTTTCCTCCTCATAGTCGCCGGCGTGATC 60
Query 61 TTTCAACTCTCAGCCGTGACTTCCGCCATTGGTATCAACTATGGAACATTAGGGAACCTT 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 TTTCAACTCTCAGCCGTGACTTCCGCCATTGGTATCAACTATGGAACACTAGGGAACCTT 120
Query 121 CAACCTCCGCAACAAGTGGTTGACTTCATCAAGAAAAATACCACTTTTG-CAAGTGTCAA 179
|||||||| ||||||||||||||||||||||||| ||| |||||||||| || |||||||
Sbjct 121 CAACCTCCACAACAAGTGGTTGACTTCATCAAGACAAAGACCACTTTTGACA-GTGTCAA 179
Query 180 GATCTATGATGCGAATCCCGACATCCTCCGATCCTTCGCTGGCTCTGAAATCAACGTCAC 239
|||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 180 GATCTATGATGCTAATCCCGACATCCTCCGAGCCTTCGCGGGCTCTGAAATCAACATCAC 239
Query 240 CATTATGGTCCCTAACGGTAACATTCCTGCGATGGTCAACGTTGCAAATGCTCGTCAATG 299
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CATCATGGTCCCTAACGGTAACATTCCTGCCATGGTCAACGTTGCAAATGCTCGTCAATG 299
Query 300 GGTCGCTGCCAATGTCTTACCGTTTCATCAGCAGATCAAGTTCAAATACCTTTGTGTCGG 359
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 300 GGTCGCTGCCAATGTCTTACCGTTTCAGCAGCAGATCAAGTTCAAATACGTTTGTGTCGG 359
Query 360 AAACGAGATTCTTTCTAGTAACGACAACAACTTGATATCAAATCTTGTGCCAGCGATGCA 419
||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 360 AAACGAGATTCTTGCTAGTAACGACAATAACTTGATATCAAATCTTGTACCAGCGATGCA 419
Query 420 AAGTCTTAACGAAGCTTTAAAAGCTTCCAATCTCACTTATATTAAGGTAACAACTCCACA 479
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 420 AAGTCTTAACGAAGCTTTAAAAGCTTCCAATCTCACTTATATCAAGGTGACAACTCCACA 479
Query 480 TGCATTTACCATAAGCTTTAACCATAATACACCAAGCGAAAGCAGATTTACTGACGATCA 539
||||||||||||||||| ||||| |||||||||||| || |||||||||||| |||||||
Sbjct 480 TGCATTTACCATAAGCTATAACCGTAATACACCAAGTGAGAGCAGATTTACTAACGATCA 539
Query 540 AAAAGAtttttttACAAAGATCTTGGAGTTTCATCGTCAGGCTAAGTCCCCATTCATGAT 599
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 AAAAGATATTTTTACAAAGATCTTGGAATTTCATCGTCAGGCTAAGTCCCCATTCATGAT 599
Query 600 CAACGCCTACACTTTTTTCACGATGGACCCGAACAATGTCAGTTACGCAATATTTGGTCC 659
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 600 CAACGCCTACACTTTTTTCACGATGGACACGAACAATGTCAATTACGCAATATTTGGTCC 659
Query 660 ATCAAATTCAGTAACGGATACCAATACACGACAGACCTACAACAACATGTTTGACGCAGT 719
||||||| || |||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 660 ATCAAATGCAATAACGGATACCAATACACAACAAACCTACACCAACATGTTTGACGCAGT 719
Query 720 CATGGATGCAACTTACTCTGCTATGAATGCTCTTGGCTACGGCGACCTAGATATCGCTGT 779
|||||||||||| || ||||||||||| ||||||||||| |||||| |||||||||| ||
Sbjct 720 CATGGATGCAACATATTCTGCTATGAAAGCTCTTGGCTATGGCGACGTAGATATCGCGGT 779
Query 780 AGGGGAGACCGGTTGGCCTACCGCTTGTGATGCTCCATGGTGCTCACCTCAAAACGCTGA 839
|||||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||
Sbjct 780 AGGGGAGACCGGTTGGCCCACGGCTTGTGACGCTTCATGGTGCTCACCTCAAAACGCTGA 839
Query 840 AAACTACAACCTCAATATCATCAAGCGTGCAGAGGTTATAGGGACACCTCTTATGCCCAA 899
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 840 AAACTACAACCTCAATATCATCAAGCGTGCACAAGTTATAGGGACACCTCTAATGCCCAA 899
Query 900 CCGCCACATCGATATCTTCATATTTGCATTGTTCAATGAAGATGGGAAACCCGGTCCAAC 959
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 CCGCCACATCGATATCTTCATATTTGCATTGTTCAATGAAGATGGAAAACCCGGTCCAAC 959
Query 960 CCGTGAGAGAAATTGGGGGATATTTAAACCGGATTTTTCGCCGATGTATGATGTTGGGGT 1019
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 960 ACGTGAGAGAAATTGGGGGATATTTAAACCGGATTTTTCACCGATGTATGATGTTGGAGT 1019
Query 1020 CCTAAAAGGCGGTATAAGCCCGCTTCC------ACCGATAAACAA---TGGAAAATGGTG 1070
|||||||||||| |||||||||||| |||||||||||| ||||||||||||
Sbjct 1020 TCTAAAAGGCGGTGGAAGCCCGCTTCCGTTTCCACCGATAAACAACAATGGAAAATGGTG 1079
Query 1071 TGTGGCAAAACAAGAAGCGACAT-ACATGCAACTACAAGCAAATATTGATTGGGTGTGCA 1129
||||| ||||| ||||||||| | | ||||||||||||||||||||||||||||| ||||
Sbjct 1080 TGTGGGAAAACCAGAAGCGACGTTA-ATGCAACTACAAGCAAATATTGATTGGGTATGCA 1138
Query 1130 GCCATGGTATTGATTGTACACCAATCTCACTTGGTGGAATATGTTTTGACAACAACAACA 1189
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1139 GCCATGGTATTGATTGTACACCAATCTCACCTGGTGGCATATGTTTTGACAACAACAACA 1198
Query 1190 TGACGACTCGCTCCTCGTTCATTATGAACGCTTATTATCAAAGCAAGGGATGT-TCTGAT 1248
|||||||||| |||||||| ||||||||||||||||| |||||||||||||| | ||||
Sbjct 1199 TGACGACTCGGTCCTCGTTTATTATGAACGCTTATTACCAAAGCAAGGGATGCGT-TGAT 1257
Query 1249 GATG-CTTGTAATTTTAGCGGTAGTGGCATGGTCACCACTACCAACCCAAGCACTAGCAC 1307
| || || || |||||||||||| |||||| || |||| |||||||||||||||||||||
Sbjct 1258 GTTGTCT-GTGATTTTAGCGGTACTGGCATCGTTACCAGTACCAACCCAAGCACTAGCAC 1316
Query 1308 ATGCCCTATACCAATAGGGGAAGGCGGTGGCGGCA----C--AGAAAGCAAAAGTGGAAA 1361
|||||||||||| ||||||||||| || ||||||| | | |||||||||||| |||
Sbjct 1317 ATGCCCTATACCGATAGGGGAAGGTGGCGGCGGCAATGGCGCAAAAAGCAAAAGTGCAAA 1376
Query 1362 TTGGTGTATGGCGAAACAAGAAGCGACAGAGACACAACTACAAGCGAATATTGATTGGGT 1421
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1377 TTGGTGTATGGCGAAACAAGAAGCGACAGAGACACAACTACAAGCTAATATTGATTGGGT 1436
Query 1422 GTGCAGCCAAGGTATAGATTGTAAACCAATCTCACCTGGTGGCCTATGTTTTGATAACAA 1481
||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1437 GTGTAGCCAAGGTATTGATTGTAAACCAATATCACCTGGTGGCATATGTTTTGATAACAA 1496
Query 1482 CAACATTAAGACTCGATCTACGTTCATTATGAACGCTTATTACCAAAGCAAAGGATACTC 1541
|||||| ||||||||||| |||||||| ||||||||||||||| | ||||||||||||||
Sbjct 1497 CAACATGAAGACTCGATCCACGTTCATAATGAACGCTTATTACGAGAGCAAAGGATACTC 1556
Query 1542 CAGAGAGGCTTGTGATTTCAAG-GGTAGTGGCATTGTCACTAATACCAACCCAAGCACTA 1600
|| ||| |||||||| ||| | ||||||||||| ||||||| |||||||||||||||||
Sbjct 1557 CAAAGACGCTTGTGACTTCC-GTGGTAGTGGCATCGTCACTACTACCAACCCAAGCACTA 1615
Query 1601 GCACATGCGTCGTAC 1615
|||||||||||||||
Sbjct 1616 GCACATGCGTCGTAC 1630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81525685080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5