BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321659
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39740.1 | Symbols: | Nucleotidyltransferase family protein... 2374 0.0
> AT2G39740.1 | Symbols: | Nucleotidyltransferase family protein
| chr2:16575752-16579120 FORWARD LENGTH=2142
Length=2142
Score = 2374 bits (1285), Expect = 0.0
Identities = 1397/1452 (96%), Gaps = 4/1452 (0%)
Strand=Plus/Plus
Query 1 ATGAGTAGAAATCCTTTCCTGGATCCTACCCTTCAAGAAATTCTTCAAGTGATTAAACCC 60
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 191 ATGAGTAGAAACCCTTTCCTGGATCCTACTCTTCAAGAAATTCTTCAAGTGATTAAACCC 250
Query 61 ACACGAGCAGATTGGGATACGAGGATCAGAGTCATTGATCAGTTGCGTGACGTCTTACAA 120
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 251 ACACGAGCAGATAGGGATACGAGGATCACAGTCATTGATCAGTTGCGTGACGTCTTACAA 310
Query 121 ACCGTAGAATGCTTAAGAGGTGCTACTGTTCAACCATTTGGATCCTTTGTGTCAAATCTC 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TCCGTAGAATGTTTAAGAGGTGCTACTGTTCAACCATTTGGATCCTTTGTGTCAAATCTC 370
Query 181 TTCACACGATGGGGAGACTTGGATCTCTCTGTTGACTTATTCAGCGGTTCTTCCATCTTG 240
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 371 TTCACACGATGGGGAGACTTAGATATCTCTGTTGACTTATTCAGCGGTTCTTCCATCTTG 430
Query 241 TTCACTGGAAAGAAGCAGAAACAAACTTTACTCGGACATTTACTACGAGCACTGAGAGCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TTCACTGGAAAGAAGCAGAAACAAACTTTACTCGGACATTTACTACGAGCACTGAGAGCG 490
Query 301 AGTGGTCTATGGTACAAACTGCAATTTGTTATTCATGCGCGAGTTCCCATTCTGAAAGTC 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 491 AGTGGTCTATGGTACAAACTGCAATTTGTTATTCATGCGCGAGTTCCTATTCTGAAAGTA 550
Query 361 GTGAGCGGCCACCAGAGAATTTCTTGTGATATTTCTATTGATAACCTGGATGGGCTTTTG 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 551 GTGAGCGGCCACCAGAGAATTTCTTGTGACATTTCTATTGATAACCTGGATGGGCTTTTG 610
Query 421 AAGAGCAGGTTCTTGTTCTGGATCAGTGAAATAGATGGGAGATTCCGCGACCTGGTTTTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 AAGAGCAGGTTCTTGTTCTGGATCAGTGAAATAGATGGGAGATTCCGCGACCTGGTTTTG 670
Query 481 CTAGTGAAGGAATGGGCGAAAGCTCATAATATCAACGACTCAAAGAACGGGACTTTCAAC 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 671 CTAGTGAAGGAATGGGCGAAAGCTCATAATATCAACGACTCAAAGACCGGGACTTTCAAC 730
Query 541 TCTTACTCTCTCAGTTTGTTAGTCATCTTCCATCTTCAGACTTGTGTGCCTGCAATCTTG 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 731 TCTTACTCTCTCAGTTTGTTAGTCATCTTCCATTTTCAGACTTGTGTGCCTGCAATCTTG 790
Query 601 CCGCCTCTAAGAGTCATATATCCGAAGAGTGCGGTTGATGATCTGACAGGTGTACGAAAA 660
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 791 CCGCCTCTAAGAGTGATATATCCGAAGAGTGCGGTTGATGATCTGACAGGTGTACGGAAA 850
Query 661 ACTGCAGAGGAAAGCATAGCGCAAGTTACTGCTGCTAATATTGCGAGATTTAAATTAGAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 851 ACTGCAGAGGAAAGCATAGCGCAAGTTACTGCTGCTAATATTGCGAGATTTAAATCAGAG 910
Query 721 ACAGCAAAATCAGTCAATCGAAGCTCGCTCTCGGAGCTTTTGGTCTCGTTTTTTGCAAAG 780
| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 911 AGAGCAAAATCAGTCAATCGAAGCTCGCTCTCGGAGCTGTTGGTCTCTTTTTTTGCAAAG 970
Query 781 TTTTCAGACATAAACTTGAAGGCCCAAGAGTTCGGTGTTTGCCCGTTTACTGGAAGATGG 840
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 TTTTCAGACATAAACGTGAAGGCCCAAGAGTTCGGTGTTTGCCCGTTTACTGGAAGATGG 1030
Query 841 GAAAAC-ATAAGCAGCAACACTACATGGCTGCCAAAGACATACTCACTCTTTGTTGAAGA 899
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GAAA-CTATAAGCAGCAACACTACATGGCTGCCAAAGACATACTCACTCTTTGTTGAAGA 1089
Query 900 TCCTTTTGAGCAACCGGTGAACGCTGCAAGGAGTGTGAGCCGTAGAAATTTGGATAGAAT 959
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1090 TCCTTTTGAGCAGCCGGTGAACGCTGCAAGGAGTGTGAGCCGTAGAAATTTGGACAGAAT 1149
Query 960 AGCTCAAGTATTTCAGATTACATCGCACCGTCTTGTCTCAGATTGTAACAGGAACTCCAT 1019
|||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||
Sbjct 1150 AGCTCAAGTATTTCAGATTACATCGCGCCGTCTTGTCTCAGAGTGTAACAGAAACTCCAT 1209
Query 1020 CATTGGGGTTCTGACAGGGAAACACATTCAAGAGTCTTTGTATAGAACAATAAGCCTCC- 1078
||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1210 CATAGGGATTCTGACAGGGCAACACATTCAAGAGTCTTTGTACAGAACAATAAGCCTCCC 1269
Query 1079 ATAGTCAACATCATGCAAACGGTATGCACAATGTCCGTAATCTGCATGGTCAGGCTAGGC 1138
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 A-AGTCAACATCATGCAAACGGTATGCACAATGTCCGTAATCTGCATGGTCAGGCTAGGC 1328
Query 1139 CTCGGAACCAGCAAATGCAGCAAAATTGGTCACAGAGCTACAATACCCAAAATCCACCAT 1198
| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1329 CACAGAACCAGCAAATGCAGCAAAATTGGTCACAGAGCTACAATACCCCGAATCCACCAC 1388
Query 1199 ATTGGCCACCTCCAACACAATCCCGACAACAACAGAATTGGCCTCAGAACAGCCCCAGGA 1258
|||||||||| | |||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct 1389 ATTGGCCACCACTAACACAATCCCGACCACAACAGAATTGGACTCAGAACAACCCCAGGA 1448
Query 1259 ATCTTCAGGGGCAACCACCTGTCCAAGGCCGAACTTGGCCTGTAATCACACAAACTCAAA 1318
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1449 ATCTTCAGGGGCAACCACCTGTCCAAGGCCAAACTTGGCCTGTAATCACACAAACTCAAA 1508
Query 1319 CGGAGCAGAAGAATCAATACAAGAACGGGAACCGACCATTGAAAAATACATCTGCAGGTT 1378
|| ||||||||| | ||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct 1509 CGCAGCAGAAGAGCCCATATAAGAGTGGGAACCGACCATTGAAAAATACATCTGCTGGTT 1568
Query 1379 CAAGTCAGAATCAGGGTCACATTGGTAAGCCATCAGGTCATATGAATGGTGTGAACTCTG 1438
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1569 CAAGTCAGAATCAGGGCCACATTGGTAAGCCATCTGGTCATATGAATGGTGTGAACTCTG 1628
Query 1439 CAAGACCTGCAT 1450
||||||||||||
Sbjct 1629 CAAGACCTGCAT 1640
Score = 132 bits (71), Expect = 1e-29
Identities = 81/86 (94%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 1418 ATATGAATGGTGTGAACTCTGCAAGACCTGCATCAAAAATTCCAAGCCAAGGCGGACAGA 1477
||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1641 ATACGAATGGTGTGAACTCCGCAAGGCCTCCATCAAAAATTCCAAGCCAAGGCGGACAGA 1700
Query 1478 TGTGGAGACCGAGACATGAGCAGTAG 1503
| ||||||||||||||||||||||||
Sbjct 1701 TCTGGAGACCGAGACATGAGCAGTAG 1726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5