BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321672
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39830.1 | Symbols: DAR2 | DA1-related protein 2 | chr2:1661... 2564 0.0
> AT2G39830.1 | Symbols: DAR2 | DA1-related protein 2 | chr2:16619762-16623791
REVERSE LENGTH=1908
Length=1908
Score = 2564 bits (1388), Expect = 0.0
Identities = 1517/1579 (96%), Gaps = 9/1579 (1%)
Strand=Plus/Plus
Query 6 ttcttcttcctcttcttcttctccttcttcttcttACGGTGTTGCTCGTGTCAGCCATAT 65
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 145 TTCCTCTTCCTCTTCTTCTTCTCCTTCTTCTTCCTACGGTGTTGCTCGTGTCAGCCATAT 204
Query 66 CTCTAATCCTTGCATCTTTGGGGAAGTTGGGTCGTCATCTTCGTCAACATATAGAGATAA 125
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 205 CTCCAATCCTTGCATCTTCGGGGAAGTTGGGTCGTCATCTTCGTCAACGTATAGAGATAA 264
Query 126 GAAATGGAAGTTGATGAAATGGGTGAGTAAGCTTTTCAAGACTGGCTCTAATGGT-GT-- 182
|||||||||||||||||||||||||||||| |||||||||| |||||| |||||| ||
Sbjct 265 GAAATGGAAGTTGATGAAATGGGTGAGTAAACTTTTCAAGAGTGGCTCGAATGGTGGTGG 324
Query 183 TAGTGGTGTTCACACTAATCATCA---TCCTCAGTTTCAAGAAGACGAGAATATGGTCTT 239
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 325 TAGTGGTGCTCACACTAATCATCATCCTCCTCAGTTTCAAGAAGACGAGAATATGGTCTT 384
Query 240 TCCTCTACCTCCTTCTTCTTTGGATGATCGGTCGAGAGGTGCACGGGACAAAAAAGAGCT 299
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||
Sbjct 385 TCCTCTACCTCCTTCTTCTTTGGATGATCGGTCAAGAGGTGCACGGGACAAAGAAGAACT 444
Query 300 CGACCGTTCAATTTCACTTTCTCTAGCTGACAACACGAAGCGCCCACATGGGTATGGTTG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CGACCGTTCAATTTCACTTTCTCTAGCTGACAACACGAAGCGCCCACATGGGTATGGTTG 504
Query 360 GTCTATGGATAACAATCGAGATTTTCCAAGGCCTTTTCACGGTGGCTTGAATCCATCATC 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 GTCTATGGATAACAACCGAGATTTTCCAAGGCCTTTTCACGGTGGCTTGAATCCATCATC 564
Query 420 TTTCATTCCACCTTATGAGCCTTCCTATCAATGCAGACGAAGACAAAGCAGAATATGTGG 479
|||||||||||||||||||||||||||||||| |||||||||| || |||||||||||
Sbjct 565 TTTCATTCCACCTTATGAGCCTTCCTATCAATATAGACGAAGAC-AA--AGAATATGTGG 621
Query 480 CGGTTGCAATCGCGATATTGGATCAGGGAACTATCTAGGATGCATGGGCACATTCTTTCA 539
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 622 CGGTTGCAATAGCGATATTGGATCGGGGAACTATCTAGGATGCATGGGCACATTCTTTCA 681
Query 540 TCCTGAATGCTTCCGTTGTCATTCTTGTGGTTATGCTATCACTGAGCATGAGTTCTCTCT 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TCCTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGTTCTCTCT 741
Query 600 GTCAGGAACCAAACCGTATCATAAGCTTTGTTTCAAAGAGCTTACTCATCCCAAATGCGA 659
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 GTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTTACTCATCCCAAATGCGA 801
Query 660 AGTTTGTCACCATTTTATACCAACTAATGATGCTGGCTTGATCGAGTATCGATGCCATCC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 AGTTTGTCACCATTTTATACCAACTAATGATGCTGGCTTGATCGAGTATCGATGCCATCC 861
Query 720 GTTTTGGAACCAAAAGTATTGCCCGTCTCACGAATATGATAAAACCGCTCGTTGTTGCAG 779
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 862 GTTTTGGAACCAAAAGTATTGCCCGTCTCACGAATATGATAAAACTGCTCGTTGTTGTAG 921
Query 780 CTGCGAACGTTTGGAGTCATGGGATGTGAGATATTACATGTTAGAAGATGGGAGAAGTTT 839
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 922 CTGCGAACGTTTGGAGTCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAAGTTT 981
Query 840 GTGTTTAGAATGTATGGAAACTGCGATAATCGATACTGGAGAGTGTCAACCGCTTTACCA 899
||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct 982 GTGTTTAGAATGTATGGAAACCGCGATAACCGATACTGGAGAATGTCAACCGCTTTACCA 1041
Query 900 CGCGATAAGAGACTATTACGAAGGAATGTACATGAAACTTGATCAACAGATTCCTATGCT 959
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 CGCTATAAGAGACTATTACGAAGGAATGTACATGAAACTTGATCAACAGATTCCTATGCT 1101
Query 960 TCTTGTTCAAAGAGAAGCTCTCAATGATGCTATCGTAGGAGAGAAAAACGGATACCATCA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 TCTTGTTCAAAGAGAAGCTCTCAATGATGCTATCGTAGGAGAGAAAAACGGATACCATCA 1161
Query 1020 CATGCCTGAGACAAGAGGTTTATGCTTGTCTGAAGAACAGACAGTTACAAGTGTTCTTAG 1079
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1162 CATGCCTGAGACAAGAGGTTTATGCTTGTCTGAAGAACAAACAGTTACAAGTGTTCTTAG 1221
Query 1080 AAGACCGAGACTTGGTGCTCACCGTCTTGTTGGTATGAGAACTCAGCCTCAAAGGCTTAC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 AAGACCGAGACTTGGTGCTCACCGTCTTGTTGGTATGAGAACTCAGCCTCAAAGGCTTAC 1281
Query 1140 ACGCAAATGTGAAGTCACAGCCATACTCGTTCTTTACGGACTCCCACGATTACTAACCGG 1199
||||||||||||||||||||| || || ||||||||||| ||||| |||||||| |||||
Sbjct 1282 ACGCAAATGTGAAGTCACAGCGATTCTAGTTCTTTACGGGCTCCCGCGATTACTGACCGG 1341
Query 1200 AGCAATTCTCGCCCATGAGCTCATGCACGGATGGTTAAGACTCAATGGGTTTAGGAACCT 1259
||||||||||||||||||||||||||| |||||| |||| || |||||||||||||||||
Sbjct 1342 AGCAATTCTCGCCCATGAGCTCATGCATGGATGGCTAAGGCTTAATGGGTTTAGGAACCT 1401
Query 1260 TAACCCTGAGGTAGAGGAAGGAATCTGCCAAGTCCTCTCTTACATGTGGCTTGAATCTGA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 TAACCCTGAGGTAGAGGAAGGAATCTGCCAAGTCCTCTCTTACATGTGGCTTGAATCTGA 1461
Query 1320 AGTTCTCTCAGATCTTTCATCAAGAAACTTGCCTTCAACATCATCGGCAGCCACACCATC 1379
|||||||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||
Sbjct 1462 AGTTCTCTCAGATCCTTCAACAAGAAACTTGCCTTCAACATCATCGGTGGCCACATCATC 1521
Query 1380 ATCATCATCATTGTCTAACAAGAAAGGAGGGAAATCAAACGTAGAGAAGAAACTTGGAGA 1439
||||||||| || || |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1522 ATCATCATCCTTCTCGAACAAGAAAGGAGGAAAATCAAACGTGGAGAAGAAACTTGGAGA 1581
Query 1440 GTTTTTTAAACATCAGATAGCTCATGATGCGTCTCCAGCTTATGGAGGAGGTTTCAGAGC 1499
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1582 GTTCTTTAAACATCAGATAGCTCATGATGCGTCTCCAGCTTATGGAGGAGGTTTCAGGGC 1641
Query 1500 AGCAAATGCAGCGGCTTGTAAGTACGGTCTACGTCGCACACTCGATCATATCCGCTTAAC 1559
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1642 AGCAAATGCAGCGGCTTGTAAGTACGGTCTTCGTCGAACACTCGATCATATCCGCTTAAC 1701
Query 1560 AGGAACTTTTCCTTTGTGA 1578
||||||||||||||||||
Sbjct 1702 TGGAACTTTTCCTTTGTGA 1720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5