BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321676

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39855.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   532    7e-151


> AT2G39855.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT3G55646.1); Has 35333 
Blast hits to 34131 proteins in 2444 species: Archae - 798; 
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; 
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | 
chr2:16637677-16639304 FORWARD LENGTH=1070
Length=1070

 Score =  532 bits (288),  Expect = 7e-151
 Identities = 331/352 (94%), Gaps = 2/352 (1%)
 Strand=Plus/Plus

Query  1    ATGGACAACAAAAAGTCGGTATCTGGTTCTTCTTCATCTTCCTCTTCGTCGTTGGATCAT  60
            |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  169  ATGGACAAGAAAAAGTCGGTATCTGGTTCCTCTTCATCGTCCTCTTCGTCGTTGGATCAT  228

Query  61   ATTTTTGGTCCAAGAGTCTCTTC-CTCGTCTTCTTCATCAACAACAGGATTGTTCCAATC  119
            |||||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||
Sbjct  229  ATTTTTGGTCCAAGAGTCTC-TCACTCGTATTCTTCATCAACAACAGGATTGTTCAAATC  287

Query  120  CATTTTCCCACTACCTTCAACGGTGATGCAAGCGAACTCGGCAAGTCGAAATGAAGCTGC  179
            ||| ||||||| ||||||| |||||| ||||| ||||| | |||||||||||| ||||||
Sbjct  288  CATCTTCCCACCACCTTCAGCGGTGACGCAAGGGAACTTGACAAGTCGAAATGGAGCTGC  347

Query  180  CAAATATCAAACTACAAATTTTGGGATTCCAAATGAAAGAGGAGAAAGGAGCAAAAATAA  239
            ||| |||||| |||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct  348  CAAGTATCAACCTACAAATTTTGAGACTCCAAATGAAAGAGGTGAAAGGAGCAAAAATAA  407

Query  240  GGAGAGAAAGAGTTACCAAAGTGAAGAAACACAACCACCATGCAACTTGAGCTCATCCAT  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  408  GGAGAGAAAGAGTTACCAAAGTGAAGAAACACAACCACCATGCAACTTGAGCTCATCCAT  467

Query  300  ATACTATGGAGGCCAAGATAACTATTCCTCTTCAACCACCAATCCAGATGCT  351
            |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  468  ATACTATGGAGGCCAAGATAACTATTCCTCTTCAACTACCAATCCAGATGCT  519


 Score =  128 bits (69),  Expect = 4e-29
 Identities = 75/78 (96%), Gaps = 0/78 (0%)
 Strand=Plus/Plus

Query  352  TATAAGAAAGATGGAGAGGAAGGCGATTCCGAAAGTGCTTCAAGAGGAAACTGGTGGGAA  411
            ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  751  TATAAGAAAGATGGAGAGGAAGGTGATTCGGAAAGTGCTTCAAGAGGAAACTGGTGGGAA  810

Query  412  GGATCGTTTAACTACTAA  429
            ||||||||||| ||||||
Sbjct  811  GGATCGTTTAATTACTAA  828



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20358438345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5