BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321705

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G03160.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   534    3e-151


> AT4G03160.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G03170.1); 
Has 46 Blast hits to 46 proteins in 13 species: 
Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 4; Plants 
- 29; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 
| chr4:1397979-1398685 FORWARD LENGTH=579
Length=579

 Score =  534 bits (289),  Expect = 3e-151
 Identities = 426/491 (87%), Gaps = 13/491 (3%)
 Strand=Plus/Plus

Query  77   aagaagaagaagaagaagaagaaTCCGTAAGTGAGGATGAGTTGGAAGTGAAAAT-TTCT  135
            ||||||||||| | || |||||||||||| |||||||||| |||||||| |||||  | |
Sbjct  98   AAGAAGAAGAATATGATGAAGAATCCGTATGTGAGGATGATTTGGAAGT-AAAATCGTGT  156

Query  136  AACCAAACATATGAAAAGAAGGGTAAAAAGAAGAGAAAAGTCGCAGAGCAGTTGACGGGT  195
            |  |||||| ||||||| ||||||   ||||||||||||||||| |||||||||| || |
Sbjct  157  ATGCAAACAAATGAAAATAAGGGT---AAGAAGAGAAAAGTCGCTGAGCAGTTGATGGAT  213

Query  196  AGCGACGTGAAGGACAATCAGTGCAGGCTCATGTTAGGGAAGGAGCAGGTGAAAAAGATG  255
            ||||||||||||||||| || | ||||||||||||||||||||||| |||||||||||||
Sbjct  214  AGCGACGTGAAGGACAACCAATACAGGCTCATGTTAGGGAAGGAGCCGGTGAAAAAGATG  273

Query  256  ATGGTTGATGTTCTGGGAAAAGCAGAGAAACTTGGGATTCATGGGCAAAAGGTCTCGGTG  315
            || |  |||| |||||||||| ||||||||||||||| | | ||||  || || ||||||
Sbjct  274  AT-G--GATGCTCTGGGAAAAACAGAGAAACTTGGGACTAAAGGGCTTAATGTTTCGGTG  330

Query  316  TATGGACCAAAGGGAGAGATTCATGAGATGGTTTTCAAGATGTGGAAGAAGGACACACCT  375
            ||||||||||| ||||||| |||| ||||||| || ||||| ||||  |||| |||||||
Sbjct  331  TATGGACCAAACGGAGAGAATCATAAGATGGTGTTGAAGATATGGATTAAGGGCACACCT  390

Query  376  ATTTTGATGAGTGTTGGATGGAAGAATTTCGTGAAGAAATATAAGCTCGAGAAGCATGTT  435
             ||||||   ||   ||||||||||||||||||||||  |||||||||||||| ||||||
Sbjct  391  GTTTTGA--CGT-CGGGATGGAAGAATTTCGTGAAGAGTTATAAGCTCGAGAAACATGTT  447

Query  436  GATTTTCTCACTATTTGGATGTTTAGGCACAAAGAGACTCGGAAGATTTGCTTCGCTATT  495
            ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct  448  GATTTTCTCACTATTTGGATGTTTAGGCACAAAAAGACTCGGGAGATTTGCTTCGCTATT  507

Query  496  GATTCCACTAGGATTCCTGTAAAGGGTATGCTGAGTCCAAAG-ATCTTGAACGCAGCCTT  554
            |||||||||||| ||||||||||||||| |||||||  |||| |||||| | | || |||
Sbjct  508  GATTCCACTAGGTTTCCTGTAAAGGGTACGCTGAGTA-AAAGGATCTTGCAGGAAGTCTT  566

Query  555  CAAGAATCCAT  565
            |||||||||||
Sbjct  567  CAAGAATCCAT  577



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27377610115


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5