BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321717
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40250.1 | Symbols: | SGNH hydrolase-type esterase superfam... 1690 0.0
> AT2G40250.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr2:16813330-16815251 FORWARD LENGTH=1086
Length=1086
Score = 1690 bits (915), Expect = 0.0
Identities = 1031/1088 (95%), Gaps = 4/1088 (0%)
Strand=Plus/Plus
Query 1 ATGAACCCTAATCTTCACATACCAATGTTTCTTACATTCCTCATCACTCTTCTTCTCTTC 60
||||||| ||||| |||| |||||||||| ||||||||||||||| | |||||||| ||
Sbjct 1 ATGAACCGTAATCAACACAAACCAATGTTTGTTACATTCCTCATCAATATTCTTCTCCTC 60
Query 61 CAACTTCTAAACCTTACCAATGCATCGCCATCCCCACCTATAACAGCCGTATACGCCTTC 120
|||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct 61 CAACTTCTAAACCTTACCAATGCATCACCATCCCCACCAATAACAGCCCTATACGCCTTC 120
Query 121 GGTGACTCCACGGTGGATTCCGGTAACAACAATTACA-TCCCTACTCTTTTCCAAAGCAA 179
|| |||||||| ||||| ||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 121 GGCGACTCCACAGTGGACTCCGGTAACAACAATTACATTCCC-ACTCTTTTCCAGAGCAA 179
Query 180 CCATCCTCCATATGGCAAATCATTTCCGGCCAAACTCTCCACCGGAAGATTCTCCGATGG 239
||||||||| ||||| ||||| |||||| ||||||||||||||||||| |||||||| ||
Sbjct 180 CCATCCTCCCTATGGTAAATCCTTTCCGTCCAAACTCTCCACCGGAAGGTTCTCCGACGG 239
Query 240 AAAACTCGCCACCGACTTCATAGTCTCCTCTCTAGGACTTAAACCCACTTTACCAGCTTA 299
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 240 AAAACTCGCCACCGACTTCATAGTCTCCTCTCTAGGACTCAAACCCACTCTACCAGCTTA 299
Query 300 CCTCAACCCTTCGGTCAAACCCGTTGACCTTTTGACCGGCGTTAGTTTTGCCTCGGCCGG 359
||||||||||||||||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 300 CCTCAACCCTTCGGTCAAACCTGTAGATCTTTTGACCGGCGTTAGTTTCGCCTCGGCCGG 359
Query 360 AGGTGGTTTAGATGATCGGACGGCAAAGTCATCATTGACT-TTGACCATGGACAAGCAAT 418
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 360 AGGTGGTTTAGATGATCGGACGGCAAAGTCATCATTGACTATT-ACCATGGACAAGCAAT 418
Query 419 GGAGTTACTTCGAAGAGGCGCTAGGTAAAATGAAGAGTTTGGTTGGAGATTCGGAGACTA 478
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 419 GGAGTTACTTCGAAGAGGCGCTGGGTAAAATGAAGAGTTTGGTTGGAGACTCGGAGACTA 478
Query 479 ATCGGGTGATTAAGAATGCTGTGTTCGTCATTAGTGCGGGCACTAATGATATGATCTTTA 538
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 ATCGGGTGATTAAGAATGCTGTGTTCGTCATTAGTGCGGGGACTAATGATATGATCTTTA 538
Query 539 ATGTTTACGATCATGTTCTTGGGAGTTTGATCTCCGTTTCGGATTATCAAGATTCTCTAC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATGTTTACGATCATGTTCTTGGGAGTTTGATCTCCGTTTCGGATTATCAAGATTCTCTAC 598
Query 599 TCAGCAAAGTCGAAGTTTTTGTTCAGAGACTATACGACGCAGGAGCACGAAGGATTACAA 658
| | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 599 TAACCAAAGTCGAAGTTTTTGTCCAGAGACTATACGAGGCAGGAGCACGAAGGATTACAA 658
Query 659 TAGCTGGACTACCACCAATCGGATGCCTTCCGGTGCAAGTAACACTTGCTAGCGTCAAAA 718
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
Sbjct 659 TAGCTGGACTACCACCAATCGGATGCCTTCCGGTGCAAGTAACACTTACTAGCATCAATA 718
Query 719 CTCCTCGCATCTTCCATCATCGGATATGTACGGAAAATCAGAACGATGATTCTCGGGTTT 778
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 719 CTCCTCGCATCTTCCATCATCGGATCTGTACGGAACATCAGAACGATGATTCTCGGGTTT 778
Query 779 ACAATAAAAAGCTACAGAAGCTAATCTTCCGTCTCAGTCAGAGGCTTCGAGGTTCCAAAG 838
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 779 ACAATCAAAAGCTACAGAAGCTAATCTTCGGTCTCAGTCAGAGGTTTCGAGGTTCCAAAG 838
Query 839 TTCTTTACCTCGATATTTACTCTCCGTTAATAGACATGATCAAACATCCTCGTAAATACG 898
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTCTTTACCTTGATATCTACTCTCCGTTAATAGACATGATCAAACATCCTCGTAAATACG 898
Query 899 GACTAGAGGAAACATTGAGAGGATGTTGCGGGACGGGGCTGCTTGAAGCAGGACCTCTAT 958
|||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||
Sbjct 899 GACTAGAGGAAACATTGAGAGGATGTTGTGGGACAGGGCTACTTGAGGCAGGACCTCTAT 958
Query 959 GCCAGCCATTGTCTCGGACTTGTGACGATGTTTCCAAGTATTTGTTCTTTGATTCTGTGC 1018
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 GCCAACCATTGTCTCGGACTTGTGACGATGTTTCCAAGTATTTATTCTTTGATTCTGTGC 1018
Query 1019 ATCCTTCACAGAAGGCTTATTCTGTCATTGCTAGTTTCGCCTTACAAAATTTGTTTCCTC 1078
|||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1019 ATCCTTCACAGACGGCTTATTCTGTCATCGCTAGTTTCGCCTTACAAAAATTGTTTCCTC 1078
Query 1079 TCCTCTAA 1086
||||||||
Sbjct 1079 TCCTCTAA 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5