BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321718
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40260.1 | Symbols: | Homeodomain-like superfamily protein ... 1964 0.0
> AT2G40260.1 | Symbols: | Homeodomain-like superfamily protein
| chr2:16816818-16818473 REVERSE LENGTH=1233
Length=1233
Score = 1964 bits (1063), Expect = 0.0
Identities = 1181/1238 (95%), Gaps = 7/1238 (1%)
Strand=Plus/Plus
Query 1 ATGAGATCAAGCAGCCAAAATTCTGAAAACTCCAAGACTTGTCTATCTAACAACTTCAAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGAGATCAAGCAGCCAAAATTCTGAAAACTCCAAGACTTGTCTATCTAACAACATCAAA 60
Query 61 GCAACCACCaagaacgaagaagataaagatgaagaggatgatgaagaaggcgaagaggat 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCAACCACCAAGAATGAAGAAGATAAAGATGAAGAGGATGATGAAGAAGGCGAAGAGGAT 120
Query 121 gaagaagagagatcgggagatcagagCCCATCTAGCAATAGCTATGTGGAAGAGAGTGGG 180
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 GAAGAAGAGAGATCTGGAGATCAGAGCCCATCTAGCAATAGCTATGAGGAAGAGAGTGGG 180
Query 181 AGTCACCATCATCATGATCAGAACAAGAAGAATGGTGGATCCGTGAGGCCGTACAACCGC 240
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AGTCACCA-C--CATGATCAGAACAAGAAGAATGGAGGATCCGTGAGGCCGTACAACCGC 237
Query 241 TCAAAGACTCCAAGGCTGCGATGGACACCGGAGCTCCATATTTGCTTTCTTCAAGCTGTG 300
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 238 TCAAAGACTCCGAGGCTGCGATGGACGCCGGAGCTCCATATTTGCTTTCTTCAAGCTGTG 297
Query 301 GAGAGATTGGGTGGACCAGATAGAGCAACACCAAAGCTTGTTCTTCAATTGATGAACGTC 360
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 298 GAGAGATTGGGTGGCCCAGATAGAGCAACACCGAAGCTTGTTCTCCAATTGATGAACGTC 357
Query 361 AAGGGGCTAAGTATTGCCCATGTCAAGAGCCATCTTCAGATGTACAGGAGCAAAAAGACC 420
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct 358 AAGGGGCTAAGTATTGCCCATGTTAAGAGTCATCTTCAGATGTACAGAAGCAAGAAGACC 417
Query 421 GATGACCCTAACCAAGGAGATCAAGGATTTTCTTTTGAACACGGAGCCGGTTACACTTAC 480
||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 418 GATGAGCCTAATGAAGGAGATCAAGGATTTTCGTTTGAACACGGAGCTGGTTACACTTAC 477
Query 481 AACCTTAGCCAACTTCCAATGCTACAAAGTTTTGATCAAAGGCCTTCTTCTAGTTTAGGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AACCTTAGCCAACTTCCAATGCTACAAAGTTTTGATCAAAGGCCTTCTTCTAGTTTAGGA 537
Query 541 TACGGAGGTGGTTCGTGGACTGACCACAGACGACAGATCTACCGTAGCCCTTGGAGAGGC 600
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TATGGTGGTGGTTCGTGGACTGACCACAGACGACAGATCTACCGTAGCCCTTGGAGAGGA 597
Query 601 TTAACGACACGAGACAATACAAGAACAAGACAAACACTGTTTAGCTCACAGCCTGGCGAG 660
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 598 TTAACGACACGAGAAAATACAAGAACAAGACAAACAATGTTTAGCTCACAGCCTGGTGAG 657
Query 661 AGAT-TCCAAGGAGTTAGCAATAGTATTCTTGACGATAAGAACAAAACTATTTCGTTTCG 719
|||| | || ||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 658 AGATAT-CACGGAGTTAGCAATAGTATTCTTAACGATAAGAACAAAACTATTTCATTTCG 716
Query 720 AATCAATTCTCATGAAGGGGTTCATGAGAACAATGGAGTAGCTGGAGCTGTTCCAAGAAT 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 717 AATCAATTCTCATGAAGGGGTTCATGATAACAATGGAGTAGCTGGAGCTGTTCCAAGAAT 776
Query 780 TCATAGAAGTTTTCTTGAAGGTATGAAAACGTTTAACAAATCATGGGGACAGAGCCTCTC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCATAGAAGTTTTCTTGAAGGTATGAAAACGTTTAACAAATCATGGGGACAGAGCCTCTC 836
Query 840 TTCCAATCCTAAGTCCTCGACCCCAACAATACCACAAGATCATATTGCTACAACACTAAA 899
|||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 837 TTCCAATCTTAAGTCCTCCACCGCAACAATACCACAAGATCATATTGCTACAACGCTAAA 896
Query 900 TTCTTATCAATGGGAGAATGCTCGAGTGGCAGAAGGATCAGAGAATATTTTGAAGAGGAA 959
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 897 TTCTTATCAATGGGAGAATGCTGGAGTGGCAGAAGGATCAGAGAATGTTTTGAAGAGGAA 956
Query 960 GAGATTATTATTGTCTGATGACTGCAGTAAGTCAGACCAAGATTTGGATCTAAGCTTGTC 1019
||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 957 GAGGTTATTATTTTCTGATGACTGCAATAAGTCAGACCAAGATTTGGATCTAAGCTTGTC 1016
Query 1020 CCTTAAGGTACCTCGGACACACGACAATCTTGGAGAATGCTTGTTAGAAGATGAAG-AAA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1017 CCTTAAGGTACCTCGGACACACGACAATCTTGGAGAATGCTTGTTAGAAGATGAAGTAAA 1076
Query 1079 AGGAACATGATGATCATCAAGATAGCAAGGGTTTGTCTCTTTCATTATCTTCTTCGGGTT 1138
|| ||||||||||||||||||||| |||| ||||||||||||| ||||| ||||| ||||
Sbjct 1077 AG-AACATGATGATCATCAAGATATCAAGAGTTTGTCTCTTTCGTTATCATCTTCAGGTT 1135
Query 1139 TATCAAACCTCGGCCGAGCCATTAGGAAAGAAGATCAAAGTGATCATAAAAAGAGAAAGA 1198
|||||| |||| |||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1136 CATCAAAACTCGACCGAACCATTAGGAAAGAAGATCAAACTGATCACAAAAAGAGAAAGA 1195
Query 1199 TTTCGGTCTTGGCAAGTCCCCTTGATCTCACTTTGTGA 1236
|||||||||||||||||||||||||||||||| |||||
Sbjct 1196 TTTCGGTCTTGGCAAGTCCCCTTGATCTCACTCTGTGA 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5