BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321719
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40270.1 | Symbols: | Protein kinase family protein | chr2:... 2148 0.0
AT3G56050.1 | Symbols: | Protein kinase family protein | chr3:... 785 0.0
> AT2G40270.1 | Symbols: | Protein kinase family protein | chr2:16821934-16824506
REVERSE LENGTH=1851
Length=1851
Score = 2148 bits (1163), Expect = 0.0
Identities = 1378/1480 (93%), Gaps = 22/1480 (1%)
Strand=Plus/Plus
Query 2 TGTTCAAAATGCGTTCTTTCGTGGCTTTTGTGATCCTTCTTAGCTACTTGGGTTCGTGTT 61
||||||||||||||||||| |||||||||||| ||||||| |||| || ||||||||||
Sbjct 184 TGTTCAAAATGCGTTCTTTTGTGGCTTTTGTGCTCCTTCTGAGCTGGTTCGGTTCGTGTT 243
Query 62 -TCTCGCTCAAAGACAAAGGTGTAGATTTTCTGAAAAGTGAAGATAGTTTAAAGAAAGAT 120
| || ||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 244 GT-TCTCTCAAGGACCAAGCTGTAGATTTTCTCAAAAGTGAAGATAGTTTAAAGAAAGAT 302
Query 121 CTATCGTCAGATGAAGATTCAACGAATTTGAAAGCTTTTGGATTTCACAGGAAAACACTT 180
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 303 CTATCGTCAGATGAAGATTCCACGTATTTGAAAGCTTTTGGATTTCACAGGAAAACACTT 362
Query 181 GTCCGTTACCCTAACAAAGATTTGCCTTCGAGAAAAGACCGCAGAAACCGCGTTGTGGCT 240
|||||| ||||| ||||||| |||||||| ||||||||||||| |||||| |||||||||
Sbjct 363 GTCCGTAACCCTTACAAAGACTTGCCTTCAAGAAAAGACCGCAAAAACCGTGTTGTGGCT 422
Query 241 GCAACTGTAACACCATCATCATCCCCAAAACCTTCTCCTAAACATGTTTCAACTAGATCT 300
|||||| ||||||||||||||||||| ||||| |||| |||||||||||||||| | ||
Sbjct 423 GCAACTACAACACCATCATCATCCCCAGAACCTGCTCCAAAACATGTTTCAACTAAAGCT 482
Query 301 TCAACAGTTCCGGAGCCACAAATGAGATCATCTACACAAAATGTTTCACCTTCTCCTTCT 360
||||||||| | |||||||||| |||||||||||||||| |||||||||||||||| |||
Sbjct 483 TCAACAGTTTCAGAGCCACAAAAGAGATCATCTACACAAGATGTTTCACCTTCTCCATCT 542
Query 361 GTGTCACTTGTAAATC-CTCCCACTCCAAGAAACGCTCATTCTTCTTCAGTGGCCGTTCC 419
| | |||||| ||| | |||||| |||||||||| |||| |||||| | |||||
Sbjct 543 GCGCCACTTGCAAA-CTCTCCCATTCCAAGAAACTCTCA---TTCTTC--T----GTTCC 592
Query 420 TTTAG-TGATTGGCTGCGTAGGCGGTGCCTTTTTTCTTCTTCTTGTAGTTACCGGTGTCT 478
||||| || ||||||||||||||||||| ||||||||||| ||||||| ||||||| |||
Sbjct 593 TTTAGTTG-TTGGCTGCGTAGGCGGTGCTTTTTTTCTTCTCCTTGTAGCTACCGGTCTCT 651
Query 479 ACTGTTTCACTAGTAAGGCCGGGAAAACTGTGAATCCTTGGCGTACTGGTCTTAGCGGAC 538
||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 652 ACTTTTTCACAAGTAAGGCCGGGAAAACTGTGAATCCTTGGCGTACTGGTCTTAGTGGAC 711
Query 539 AACTTCAGAAAGTATTCGTAACTGGTATACCTGTACTTAAAAGATCTGAGATTGAAGCTG 598
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 712 AACTTCAGAAAGTATTCGTTACTGGTATTCCTGTACTCAAAAGATCTGAGATTGAAGCTG 771
Query 599 CATGTGAAGATTTTAGTAATGTCATTGGATCTTGCCCCATTGGGAAATTGTTCAAAGGAA 658
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 772 CATGTGAAGATTTTAGTAATGTCATTGGATCTTGTCCCATTGGGAAGTTGTTCAAAGGAA 831
Query 659 CATTATCAAGTGGAGTGGAGATTGCTGTTGCTTCTTTTGCTACTACCT-CTGCCAAAGAC 717
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 832 CATTATCAAGTGGAGTGGAGATTGCTGTTGCTTCTTTTGCTACTA-CTACTGCCAAAGAC 890
Query 718 TGGAAGGACAATACAGAAATTCACTTTAGGAAGAAGATCGAAATGTTATCGAAGATCAAC 777
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 891 TGGAAGGACAGTACAGAAATTCACTTCAGGAAGAAGATCGAAATGTTATCGAAGATCAAC 950
Query 778 CACAAGAATTTTGCAAACCTTCTTGGGTATTGTGAAGAAAAGGAACCTTTCACTAGGATC 837
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 951 CACAAGAATTTTGCAAACCTTCTTGGTTATTGTGAAGAAAAGGAACCTTTCACCAGGATC 1010
Query 838 TTGATCTTTGAGTATGCTCCAAATGGATCACTCTTTGAGCATTTACACTT-TAAAGAATC 896
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1011 TTGATCTTTGAGTATGCTCCAAATGGATCACTCTTTGAGCATTTACA-TTATAAAGAATC 1069
Query 897 AGAACACTTGGATTGGGGAATGCGGTTAAGAATTGCAATGGGATTAGCATATTGCCTTGA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 AGAACACTTGGATTGGGGAATGCGGTTAAGAATTGCAATGGGATTAGCATATTGCCTTGA 1129
Query 957 CCATATGCACCAACTCAATCCACCTATAGCTCACACCAATCTCGTCTCGTCATCTCTTCA 1016
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1130 CCATATGCACCAACTCAATCCACCTATAGCTCACACCAATCTCGTCTCATCATCTCTTCA 1189
Query 1017 GCTCACAGAGGATTATGCTGTCAAAGTATCGGATTTCAGTTTCGGTCCATCTGAGACAGA 1076
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1190 GCTCACAGAGGATTATGCTGTCAAAGTATCAGATTTCAGTTTCGGTTCATCTGAGACAGA 1249
Query 1077 GACTAGCATCAACGACA-CA--GTCATAGACACAAACATCTCAGTCTTGAATCCAGAAGA 1133
||||| ||||||| ||| || |||||||||||| ||||||||| |||||||||||||||
Sbjct 1250 GACTAACATCAACAACAACACAGTCATAGACACACACATCTCAGCCTTGAATCCAGAAGA 1309
Query 1134 AAACGTTTACAGCTTCGGTTTACTATTATTCGAAATGATAAGCGGGAAACTCCCAGAATC 1193
||| |||||||||| |||||||| |||||||||||||||| |||||||||| ||||||
Sbjct 1310 CAACATTTACAGCTTTGGTTTACTGTTATTCGAAATGATAACCGGGAAACTCATAGAATC 1369
Query 1194 GGTTAACAAACCTGACTCGGTAGATAGCGCGCTGGTTGATTTCTTAAGAGGAGAGACTCT 1253
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1370 CGTTAACAAACCTGACTCAGTAGATAGCTCGCTGGTTGATTTCTTAAGAGGAGAGACTCT 1429
Query 1254 AGCCAAGATGGTAGATCCAACACTGGAATCTTATGATGACAAGATTGAGAATATAGGTGA 1313
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1430 AGCCAAAATGGTAGATCCAACACTGGAATCTTATGATGCCAAGATTGAGAATATAGGTGA 1489
Query 1314 AGTGATCAAATCATGCCTCAGGACCGACCCGAAAGAGAGACCTACAATGCGGGAAGTCAC 1373
|||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1490 AGTGATCAAATCATGCCTTAGGACTGACCCGAAAGAGAGACCTACAATGCAAGAAGTCAC 1549
Query 1374 AGGATGGTTACGGGAGATCACGGGAATATCACCGAATGATGCTACGCCGAAATTGTCACC 1433
||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||||||
Sbjct 1550 AGGATGGTTACGGGAGATCACGGGATTGTCACCGAACGATGCTACACCGAAATTGTCACC 1609
Query 1434 TCTTTGGTGGGCAGAGTTGGAGGTTTTGTCCACGGCTTAA 1473
|||||||||||||||||||||||||||||||||||| |||
Sbjct 1610 TCTTTGGTGGGCAGAGTTGGAGGTTTTGTCCACGGCGTAA 1649
> AT3G56050.1 | Symbols: | Protein kinase family protein | chr3:20797955-20800943
REVERSE LENGTH=2104
Length=2104
Score = 785 bits (425), Expect = 0.0
Identities = 879/1089 (81%), Gaps = 67/1089 (6%)
Strand=Plus/Plus
Query 416 TTCCTTTAGTGATTGGCTGCGTAGGC-GGTGCCT-TTTTTCTTCTTCTTGTAGTTACCGG 473
||||| ||||| ||||||| || || |||| || | ||| | || ||| ||| ||| ||
Sbjct 671 TTCCTATAGTGGCTGGCTGCATA-GCGGGTG-CTGTGTTTATCCTCCTTTTAGCTACTGG 728
Query 474 TGTCTACTGTTTCACTAGTAAGGCCGGGAAAACTGTGAATCCTTGGCGTACTGGTCTTAG 533
||| | || ||| | |||||||| |||||| |||||||||| |||||||| ||||||||
Sbjct 729 TGTTTTCTTTTTTAAAAGTAAGGCTGGGAAATCTGTGAATCCCTGGCGTACAGGTCTTAG 788
Query 534 CGGACAACTTCAGAAAGTATTCGTAACTGGTATACCTGTACTTAAAAGATCTGAGATTGA 593
||||||||||||||||| ||| |||||||| | || ||| |||||||||||||||||
Sbjct 789 TGGACAACTTCAGAAAGTGTTCATAACTGGTGTCCCCAAACTCAAAAGATCTGAGATTGA 848
Query 594 AGCTGCATGTGAAGATTTTAGTAATGTCATTGGATCTTGCCCCATTGGGAAATTGTTCAA 653
|||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct 849 AGCTGCCTGTGAAGATTTTAGTAATGTCATTGGGTCTTGCCCCATTGGTACATTGTTCAA 908
Query 654 AGGAACATTATCAAGTGGAGTGGAGATTGCTGTTGCTTCTTTTGCTACTACCTCTGCCAA 713
||| || |||||||||| |||||||| ||||| |||||| |||||||| | ||||||||
Sbjct 909 AGGGACGCTATCAAGTGGGGTGGAGATAGCTGTGGCTTCTGTTGCTACTGCGTCTGCCAA 968
Query 714 AGACTGGA-AGGACAATACAGAAATTCACTTTAGGAAGAAGATCGAAATGTTATCGAAGA 772
||| |||| | | |||| |||||| || || || |||||||||||||||||||| ||||
Sbjct 969 AGAATGGACA-AATAATATAGAAATGCAGTTCAGAAAGAAGATCGAAATGTTATCCAAGA 1027
Query 773 TCAACCACAAGAATTTTG-CAAACCTTCTTGGGTATTGTGAAGAA-AAGGAACCTTTCAC 830
| |||||||||||||||| | ||||||||||| || ||||||||| || |||||||||||
Sbjct 1028 TAAACCACAAGAATTTTGTC-AACCTTCTTGGTTACTGTGAAGAAGAA-GAACCTTTCAC 1085
Query 831 TAGGATCTTGATCTTTGAGTATGC-TCCAAATGGATCACTCTTTGAGCATTTACACTTTA 889
|||||||||| ||||||| ||||| | |||| ||| || ||||||| |||||||||| ||
Sbjct 1086 TAGGATCTTGGTCTTTGAATATGCAT-CAAACGGAACAGTCTTTGAACATTTACACTATA 1144
Query 890 AAGAATCAGAACACTTGGATTGGGGAATGCGGTTAAGAATTGCAATGGG-ATTAGCATAT 948
||||||||||||||||||| |||| ||||||| ||||||| |||||||| | |||| |||
Sbjct 1145 AAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGGGCA-TAGCTTAT 1203
Query 949 TGCCTTGACCATATGCACCAACTCAATCCACCTATAGCT-CACACCAATC-TCGTCTCGT 1006
|||||||||||||||||| |||||| |||||||||| | |||| ||||| || |||| |
Sbjct 1204 TGCCTTGACCATATGCACGGACTCAAGCCACCTATAG-TCCACAGCAATCTTC-TCTCAT 1261
Query 1007 CATCTCTTCAGCTCACAGAGGATTATGCTGTCAAAGTAT-CGGATTTC-A-----G---T 1056
|||| |||| ||||||||||| || || |||||| | | |||||||| | | |
Sbjct 1262 CATCAGTTCAACTCACAGAGGACTACGCAGTCAAAAT-TGCGGATTTCAATTTTGGATAT 1320
Query 1057 TT---CGGTCCATCTGAGACAGAGA-CTAGCATCAACGACACAGTCATAGACACAAACAT 1112
|| || ||||| |||||||| | | |||| ||| | ||| ||||||| ||||||||
Sbjct 1321 TTAAAAGGCCCATCCGAGACAGAAAGC-AGCACCAATG-CAC--TCATAGATACAAACAT 1376
Query 1113 CTCAGTCTTGAATC-C-AGAAGAAAACGTTTACAGCTTCGGTTTACTATTATTCGAAATG 1170
||||| || | | |||||| || ||| |||||||||| || || || || ||| ||
Sbjct 1377 CTCAG-AAACAA-CACAAGAAGACAATGTTCACAGCTTCGGGTTGCTGTTGTTTGAACTG 1434
Query 1171 ATAAGC-GGGAAACTCCCAGAATCGGTT-AACAAACCTGACTCGGTAGATAGCGCG-CTG 1227
|| | | || ||||||||||| || ||| || ||| ||||||| |||||| || | ||
Sbjct 1435 ATGA-CAGGAAAACTCCCAGAGTCAGTTCAA-AAAGGTGACTCGATAGATACCG-GATTG 1491
Query 1228 GTTGAT-TTCTTAAGAGGAGAGAC-TCT-AGCCAAGATGGTAGATCCAAC-ACTGGAATC 1283
| || | ||||| |||||| |||| | | || ||||||| ||||| || | || || |
Sbjct 1492 GCTG-TCTTCTTGAGAGGAAAGACAT-TAAG-GGAGATGGTGGATCCGACAATTGAAAGC 1548
Query 1284 TTATGATGACAAGATTGAGAATATAGGTGAAGTGATCAAAT-CATGCCTCAGGACC-GAC 1341
|| ||| || |||||||||||||||||||||||||||||| | ||| | || | | |||
Sbjct 1549 TT-TGACGAGAAGATTGAGAATATAGGTGAAGTGATCAAAAGC-TGCATAAG-AGCAGAC 1605
Query 1342 CCGAAAGAGAGACCTACAATGCGGGAAGTCACAGG-ATGGTTACGGGAGATCACGGGAAT 1400
||||| ||||||| | |||| |||||||||||| | | ||||| |||||||| ||| |
Sbjct 1606 GCGAAACAGAGACCGATAATGAAGGAAGTCACAGGGA-GATTACGAGAGATCACTGGATT 1664
Query 1401 ATCACC-GAATGATGCTA-CGCCGAAA-TTGTCACCTCTTTGGTGGGCAGAGTTGGAGGT 1457
|||||| || || ||| | || ||| || ||||| || |||||||||||| |||| ||
Sbjct 1665 ATCACCAGAC-GACACTATC-CCAAAACTT-TCACCACTCTGGTGGGCAGAGCTGGAAGT 1721
Query 1458 TTTGTCCAC 1466
| |||||||
Sbjct 1722 TCTGTCCAC 1730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5