BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321760
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40740.1 | Symbols: WRKY55, ATWRKY55 | WRKY DNA-binding prot... 1234 0.0
> AT2G40740.1 | Symbols: WRKY55, ATWRKY55 | WRKY DNA-binding protein
55 | chr2:16997177-16999277 FORWARD LENGTH=880
Length=880
Score = 1234 bits (668), Expect = 0.0
Identities = 797/858 (93%), Gaps = 13/858 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGAGGTAATGTCAATGATCTTCCACGGAATGAAACTAGTTAAAACGCTCGAGTCC 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 31 ATGGAAGAGGTAATGTCAATGATCTTCCACGGAATGAAACTAGTTAAATCGCTCGAGTCC 90
Query 61 AGCTTACCGGAAAAGCCACCGGAATCGCTATCAACCTCTCTTGACGAAATCGCAAAGACA 120
|||||||||||||||||||||||||| |||| || ||||||||||| |||| |||||||
Sbjct 91 AGCTTACCGGAAAAGCCACCGGAATCTCTATTGACATCTCTTGACGAGATCGTAAAGACA 150
Query 121 TTCAGTGATGCAAACGAGCGGCTGAAGATGTTACTAGAAATT-AGAAACTCCGAGACCGC 179
|||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| ||
Sbjct 151 TTCAGTGATGCAAACGAGCGGCTGAAGATGTTACTAGAGATTAAG-AACTCCGAGACTGC 209
Query 180 GTTGAAC-CAACTCAAACCGGTGGTTGCGTCCGTTGCAAACCAGATGTTAATGCAGATGG 238
||| ||| ||| |||||||||| ||| ||||||||||||||||||||| ||||||||||
Sbjct 210 GTTAAACAAAAC-CAAACCGGTGATTGTGTCCGTTGCAAACCAGATGTTGATGCAGATGG 268
Query 239 AACCGAGTTTGATGCAAGAGTATTGGTTAAGGTGTGGCGGGTCTACGTCATCTCATGAAG 298
||||| || |||||||||||||||||||||||| ||||||||| ||||| |||| |||
Sbjct 269 AACCGGGTCTGATGCAAGAGTATTGGTTAAGGTATGGCGGGTCCACGTCGTCTC---AAG 325
Query 299 GAACCGAGGCCATGTTTCAGACGCAGCTCATGGCCGTTGATGGTGGTGGTGGAAGGAATT 358
|||| ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 326 GAACGGAGGCCATGTTCCAGACGCAGCTCATGGCCGTTGATGGTGGTGGAGAAAGGAATT 385
Query 359 TGACGGCTGCAGCAGAAGGATCCGGCGCTAGCGGTTCCTCCACGCCAAGGCAGCGGAGAA 418
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 TGACGGCTGCAGTAGAAAGATCCGGCGCTAGCGGTTCCTCCACGCCAAGGCAGCGGAGAA 445
Query 419 GGAAGGACGAAGGAGAAGAACAAACTGTGTTGGTGGCGGCGCTAAGGACAGGGAACACAG 478
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 446 GGAAGGACGAAGGAGAAGAACAAACGGTGTTGGTGGCGGCGCTAAGGACGGGGAACACAG 505
Query 479 ATCTGCCACCTGACGATAACCATACTTGGCGTAAATACGGTCAAAAGGAAATTCTTGGCT 538
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 506 ATCTGCCACCCGACGATAACCATACTTGGCGTAAATACGGTCAAAAAGAAATTCTTGGCT 565
Query 539 CTAGGTTTCCTAGGGCGTACTATAGGTGCACCCACCAAAAGCTATACAATTGCCCAGCCA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 566 CTAGGTTTCCTAGGGCGTACTATAGGTGCACCCACCAAAAGCTATACAATTGCCCGGCCA 625
Query 599 AGAAACAAGTCCAACGCCTCAACGACGATCCTTTCACCTTCCGAGTTACATACCGTGGCT 658
||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct 626 AGAAACAAGTCCAACGCCTTAACGACGATCCCTTCACCTTCCGGGTCACATACCGTGGCT 685
Query 659 CACACACTTGCCACATCTACTCAACCGCTCCAACCGCATCCTCTGCCGCTCCCA---CCG 715
||||||||||| ||| ||||||||||||||||||||||||||||| |||| | ||
Sbjct 686 CACACACTTGCTACA---ACTCAACCGCTCCAACCGCATCCTCTGCCACTCCAAGTACCA 742
Query 716 CTCCAATCCCATCCGTCACCACAGGTCATTCCGTTGACTACGGTCTTGCTGTCGTTGACA 775
||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 743 TTCCAATCTCATCCGTCACCACTGGTCATTCTGTTGACTACGGTCTTGCTGTCGTTGACA 802
Query 776 TGGCTGATGCTATGTTTGGTAGCGGCGGGGTCGGTACCAACATGGATTTCATATTTTCTA 835
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 803 TGGCTGATGTTATGTTTGGTAGCGGCGGGGTCGGAACCAACATGGATTTCATATTTCCTA 862
Query 836 TCAACGATCCATCTCAAC 853
|||||||||||| |||
Sbjct 863 AAAACGATCCATCTTAAC 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5