BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321761
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40750.1 | Symbols: WRKY54, ATWRKY54 | WRKY DNA-binding prot... 1604 0.0
AT3G56400.1 | Symbols: WRKY70, ATWRKY70 | WRKY DNA-binding prot... 169 6e-41
> AT2G40750.1 | Symbols: WRKY54, ATWRKY54 | WRKY DNA-binding protein
54 | chr2:17000454-17002468 REVERSE LENGTH=1337
Length=1337
Score = 1604 bits (868), Expect = 0.0
Identities = 968/1017 (95%), Gaps = 4/1017 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCAAATAGTAACAACACCAAATCCATAAAGAGAAAAGTTGTCGACCAACTTGTC 60
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 115 ATGGATTCGAATAGTAACAACACGAAATCCATAAAGAGAAAAGTTGTCGACCAACTTGTC 174
Query 61 GAAGGCTATGAATTCGCTACTCAGCTTCAGCTTCTCCTCTCTCATCAACACTCTAAACAG 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 175 GAAGGCTATGAATTCGCTACTCAGCTTCAGCTTCTCCTTTCTCATCAACACTCTAACCAG 234
Query 121 TACCACATCGATCAGACCCGTCTTGTTTCCGGGTCGGGTTCAGTTTCCGGTGTTCCAGAT 180
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 235 TACCACATCGATGAGACCCGTCTTGTTTCCGGGTCGGGTTCAGTTTCCGGTGGTCCAGAT 294
Query 181 CCCGTTGATGAGCTCATGTCTAAGATCTTGGGATCTTTCCATAAAACTATTTCCGTTCTT 240
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 295 CCCGTTGATGAGCTCATGTCTAAGATCTTGGGATCTTTCCATAAAACTATATCGGTTCTT 354
Query 241 GATTCTTTTGATCCCGTCACCGTCTCTGTCCCCATCTCCGTCGAGGGTTCATGGAATGCT 300
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 355 GATTCTTTTGATCCCGTCGCCGTCTCTGTCCCCATCGCCGTCGAGGGTTCATGGAATGCT 414
Query 301 TCATGTGGAGATGATTCGGCGACTCCGGCGAGTTGCAACGGTGGAGATTCCGGTGATAGT 360
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 415 TCATGTGGGGATGATTCGGCGACTCCGGTGAGTTGCAACGGTGGAGATTCCGGTGAGAGT 474
Query 361 AAGAAGAAGAGATTAGGAGTTGGTAAGGGTAAAAGAGGATGCTACACTAGAAAGAAGAGA 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 475 AAGAAGAAGAGATTAGGGGTTGGTAAGGGTAAAAGAGGATGCTACACTAGAAAGACGAGA 534
Query 421 TCACATACAAGGATCGTGGAAGCTAGAAGTTCTGAAGATAGATATGCTTGGAGGAAATAT 480
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 535 TCACATACAAGGATCGTGGAAGCTAAAAGTTCTGAAGACAGATATGCTTGGAGGAAATAT 594
Query 481 GGACAAAAGGAGATTCTTAATACCACATTCCCAAGAAGTTATTTTAGATGCACACACAAG 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 595 GGACAAAAGGAGATTCTTAATACCACATTCCCAAGAAGTTACTTTAGATGCACACACAAG 654
Query 541 CCAACGCAAGGATGCAAAGCAACAAAGCAAGTACAGAAAAAGGAGCAAGACCCTGAGATG 600
|||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||
Sbjct 655 CCAACGCAAGGATGCAAAGCAACAAAGCAAGTTCAGAAACAGGATCAAGATTCTGAGATG 714
Query 601 TTCCAAATCACATACATTGGCTATCACACATGCACTGCCACTGACCAAACACACACGAAG 660
||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||
Sbjct 715 TTCCAAATCACATACATTGGCTACCACACATGCACTGCCAATGACCAAACGCACGCGAAG 774
Query 661 ACCGAGCCTTTCGATCAAGAAATCATTATGGATTTGGAAAAGACATTGGCTGCAAGCACT 720
||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 775 ACCGAGCCTTTTGATCAAGAAATCATTATGGATTCGGAAAAGACATTGGCTGCTAGCACT 834
Query 721 GTTCAGAACCATGTCAATGCTATGGTGCAAGAGCAAGAGAACAACATCAGTAGTGTGATA 780
| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 835 GCTCAGAACCATGTCAATGCTATGGTGCAAGAGCAAGAGAACAACACCAGCAGTGTGACA 894
Query 781 GCTGTAGGCGCAGGCATGGTTAAGGAGGAAGAGAATAACAATGGTGATCAGAGTAAAGAT 840
|| ||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 895 GCAATAGACGCAGGCATGGTTAAGGAGGAACAAAATAACAATGGTGATCAGAGTAAAGAT 954
Query 841 TATTGTGAGGTCTCTTCGACAGGTGAGGACTTGTCATTGGTTTGGCAAGAGACGATGATG 900
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TATTATGAGGGCTCTTCGACAGGTGAGGACTTGTCATTGGTTTGGCAAGAGACGATGATG 1014
Query 901 TTTGATGATCATCAAAATAACTACTATTGTGGTGAAATCAGTACTACTTCTCATCAATTT 960
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1015 TTTGATGATCATCAAAATCACTACTATTGTGGTGAAACCAGTACTACTTCTCATCAATTT 1074
Query 961 GGTTTCATCGACAACGAT---CAGCTTTCCTCCTTATTCGACTCATATTGTGCCTGA 1014
|||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||
Sbjct 1075 GGTTTCATCGACAACGATGATCAGTTTTCCTCCTTCTTCGACTCATATTGTGC-TGA 1130
> AT3G56400.1 | Symbols: WRKY70, ATWRKY70 | WRKY DNA-binding protein
70 | chr3:20908928-20910481 REVERSE LENGTH=1111
Length=1111
Score = 169 bits (91), Expect = 6e-41
Identities = 221/281 (79%), Gaps = 19/281 (7%)
Strand=Plus/Plus
Query 345 AGATTCCGGTGATAGTAAGAAGAAGAGATTAGGAGTTGGTAAGGGTAAAAGAGGATGCTA 404
||||||||| |||||| | ||| ||||| ||| | |||||||||||||||||||||
Sbjct 324 AGATTCCGGCGATAGT-CG--GAAAAGATTGGGACCCGTTAAGGGTAAAAGAGGATGCTA 380
Query 405 CACTAGAAAGAAGAGATCACATACAAGGATCGTGGA-AGCTAGAAGT-T-C-TGAAGATA 460
|| ||||| |||||||| | || | | | | | || | | | | | | ||| ||
Sbjct 381 CAAAAGAAAAAAGAGATCGGAGACGTGTA-C-TATAGAG-TCG-ACTATACTTGAGGA-C 435
Query 461 G-ATATGCTTGGAGGAAATATGGACAAAAGGAGATTCTTAATACCACATTCCCAAGAAGT 519
| || | ||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 436 GCATTTTCTTGGAGGAAATATGGACAAAAGGAGATTCTTAATGCCAAATTCCCAAGAAGT 495
Query 520 TATTTTAGATGCACACACAAGCCA-ACGCAAGGATGCAAAGCAACAAAGCAAGTACAGAA 578
|| |||||||||||||||||| | || ||||| ||||| |||||||||||||| |||||
Sbjct 496 TACTTTAGATGCACACACAAGT-ATACCCAAGGGTGCAAGGCAACAAAGCAAGTCCAGAA 554
Query 579 AAAGGAGCAAGA-CCCTGAGATGTTCCAA-ATCACATACAT 617
|||| || ||| |||||||| | |||||||||||
Sbjct 555 GGTTGAGCTCGAACCCA-AGATGTTC-AGTATCACATACAT 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5