BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321767

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40790.1 | Symbols: ATCXXS2, CXXS2 | C-terminal cysteine res...   715    0.0  


> AT2G40790.1 | Symbols: ATCXXS2, CXXS2 | C-terminal cysteine residue 
is changed to a serine 2 | chr2:17022963-17024270 REVERSE 
LENGTH=861
Length=861

 Score =  715 bits (387),  Expect = 0.0
 Identities = 440/466 (94%), Gaps = 2/466 (0%)
 Strand=Plus/Plus

Query  1    ATGGGGAATCATTGTACAAGAATTCCTTGTTGTAGAAAGGTGTGTTCATGTATATGCTGT  60
            |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct  251  ATGGGGAATCATTGTACAAGAATTCCTTGTTGTAAAAAGGTGTGTTCATGTATCTGCTGT  310

Query  61   TGCAGCGGAAGGAACAAGACTCAAGCTTGGGGCCAGAAAGGGTCCTGCTTTATAAAAGGG  120
            |||| | |||||||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct  311  TGCAACAGAAGGAACAAGACTCAAGCTAGGAGCCAGAAAGGGTCCTACTTTATAAAAGGG  370

Query  121  AAGGTCCATCCCGTTAGTAGAATGGAGAAATGGGAGGAGAAGATCACTGAAGCTAATAGG  180
            ||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct  371  AAGGTCCATCCGGTAAGTAGAATGGAGAAGTGGGAGGAGAAGATCACAGAAGCTAATAGT  430

Query  181  CAAGGCAAAATTCTCGTAGTGAATTTCAAGGCTTCGTGGTGTTTACCTTGTAAGAA-AAT  239
            || ||||||||||| ||||||||||||||||||||||||||||||||| |||| || |||
Sbjct  431  CATGGCAAAATTCTTGTAGTGAATTTCAAGGCTTCGTGGTGTTTACCTAGTAA-AACAAT  489

Query  240  AGCACCAATATACCAGGAGCTTGCATCCACATACACCTCAATGATATTTGTCACTATAGA  299
            |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  490  ATTACCAATATACCAGGAGCTTGCATCCACATACACCTCAATGATATTTGTCACTATAGA  549

Query  300  CGTGGAAGAGCTCGCTGAGTTTAGTCATGAATGGAACGTGGACGCAACTCCAACAGTAGT  359
            ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  550  CGTCGAAGAGCTCGCTGAGTTTAGTCATGAATGGAACGTGGATGCAACTCCAACAGTAGT  609

Query  360  GTTCCTTAAAGATGGGAGGCAAATGGATAAACTTGTAGGTGGAGATGCTGCAGAGCTTCA  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  610  GTTCCTTAAAGATGGGAGGCAAATGGATAAACTTGTAGGTGGAGATGCTGCAGAGCTTCA  669

Query  420  GAAGAAAACTGCAGCAGTTGCAGCTCTCCTTCTCAGACAGTCTTAA  465
            ||||||||||||||||| ||||  ||||||||| ||||| ||||||
Sbjct  670  GAAGAAAACTGCAGCAGCTGCAAATCTCCTTCTTAGACAATCTTAA  715



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5