BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321769
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40810.1 | Symbols: ATATG18C, ATG18C | homolog of yeast auto... 1807 0.0
AT3G56440.1 | Symbols: ATATG18D, ATG18D | homolog of yeast auto... 1059 0.0
> AT2G40810.1 | Symbols: ATATG18C, ATG18C | homolog of yeast autophagy
18C | chr2:17032464-17034600 FORWARD LENGTH=1576
Length=1576
Score = 1807 bits (978), Expect = 0.0
Identities = 1084/1136 (95%), Gaps = 3/1136 (0%)
Strand=Plus/Plus
Query 82 TCTGGTT-CAGAATCAGAATCTATTAACAACGAGGAAGCAGAGTTGGTTTCTGTGTGTTG 140
|||| || |||||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct 183 TCTGCTTCCAGAATCAGAATCTATGAAAAAAGAGGAAGCAGAGTTAGTTTCTGTGTGTTG 242
Query 141 GAATCAGGATTCAAGTTGTTTTGCAGCTGGAACGAGTCATGGTTTTCGTATATATAACTG 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GAATCAGGATTCAAGTTGTTTTGCAGCTGGAACGAGTCATGGTTTTCGTATATATAACTG 302
Query 201 TCAACCTTTCAAGGAAACTTTCAGGCGTGAGCTAAAGAACGGCGGTTTTAAAATTGTAGA 260
| |||||||||| |||||||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 303 TGAACCTTTCAAAGAAACTTTCAGGCGTGAGCTAAAGGACGGTGGTTTTAAAATCGTAGA 362
Query 261 GATGCTTTTCCGAAGCAATATATTGGCACTTGTTGGTGGTGGACCTAACTCTCAGTACCC 320
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 363 GATGCTTTTCCGTAGCAATATACTGGCACTTGTTGGTGGTGGACCTAACTCTCAGTATCC 422
Query 321 TTCAAACAAAGTACTAATTTGGGATGATCATCAGAGCCGTTGCATCAGTGAATTTGCATT 380
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 423 TTCAAGCAAAGTACTAATTTGGGATGATCATCAGAGCCGTTGCATTAGTGAATTTGCATT 482
Query 381 TAGGTCTGAGATTCGTGCTGTGAAATTAAGAAGGGATCGGATTGTTGTTGTTCTTGAACA 440
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TAGGTCTGAGATTCGTGCAGTGAAATTAAGAAGGGATCGGATTGTTGTTGTTCTTGAACA 542
Query 441 TAAGATTTATGTTTACAATTTTATGGACCTTAGACTTCTTCATCAGATTGAAACCCAAGC 500
||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct 543 TAAGATTTATGTTTATAACTTTATGGATCTTAGACTTCTTCATCAGATTGAAACTCAAGC 602
Query 501 TAATCCTAGAGGATTATGTTGCCTTTCTCATCATTCTAATACGTCTGTGCTCGCTTGCCC 560
||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 603 TAATCCTAGAGGATTGTGTTGCCTTTCTCATCATTCTAATACGTCTGTGTTGGCTTGCCC 662
Query 561 CGGTCTTC-ATCGAGGAGAGATTCGAGTTGAACATTTCGGGCTTAACATGGTACAAATCA 619
|||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 663 TGGTC-TCAATCGAGGAGAGATTCGTGTTGAACATTTCGGGCTTAACATGGTACAAATCA 721
Query 620 TAAATGCTCATGATTCTAGTATTGCGTGTATGACTTTGACATTGGATGGTTTGTTGCTCG 679
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 722 TAAATGCTCATGATTCAAGTATTGCGTGTATGACCTTGACATTGGATGGTTTGTTGCTTG 781
Query 680 CAACTGCTAGTACAAAGGGAACTCTGATTAGAATCTTCAACACTATGGACGGAACTCGTT 739
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 782 CAACTGCTAGTACAAAGGGAACTCTGATTAGAATCTTCAACACAATGGATGGAACTCGTT 841
Query 740 TGCAAGAGGTACGAAGAGGAGTGGACAGAGCAGATATTTATAGCATTGCACTTTCACCAA 799
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 842 TGCAAGAGGTACGAAGAGGAGTCGACAGAGCAGATATATATAGCATTGCACTTTCACCAA 901
Query 800 ACGTGCAGTGGCTGGCTGTATCAAGCGACAAGGGGACTGTTCACATTTTCTCTCTTAGAG 859
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 902 ATGTGCAGTGGCTGGCGGTATCAAGTGACAAGGGGACTGTTCACATTTTCTCTCTTAGAG 961
Query 860 TTAGGGTAGTTGGGGAGGATTCTTATTCCACTGAAAATGCAGCTCTCCTGACACAACAAA 919
||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 962 TTAGGGTTGTTGGGGAGGATTCTTATTCCACTGAAAATGGAGCTCTGTTGACACAACAAA 1021
Query 920 CTTATTCTACTTCTCTGCAAGGCCTTGTTTCTCCAACCACTGGTACCAATCCCGGTTCGT 979
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1022 ATTATTCTAATTCTCTGCAAGGCCTTGTTTCTCCAACCATTGGTACCAATCCCGGTTCGT 1081
Query 980 CATTGTCGTTTATGAGAGGTGTTCTACCAAAGTATTTCAGCTCGGAATGGTCATATGCAC 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 CATTGTCGTTTATGAGAGGTGTTCTACCAAAGTATTTCAGCTCGGAATGGTCATATGCAC 1141
Query 1040 AGTTTCATGTATCAGAAGTCACACAATTCTTCGCAGCATTTGGCAGTAACAACACGGTTG 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 AGTTTCATGTATCAGAAGTCACACAATTCTTCGCAGCATTTGGCAGTAACAACACGGTTG 1201
Query 1100 CTATTATCGGCATGGATGGAAGTTTTTACAGATGCAGCTTTGATCCCGTGAACGGAGGAG 1159
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1202 CTATTATCGGCATGGATGGAAGTTTCTACCGATGCAGCTTTGATCCCGTGAACGGAGGAG 1261
Query 1160 AGATGGGGCAACTGGAATATTTCCACTTTCTGAAGACGGACAACCGCCGGAGATAA 1215
|||||||||||||||||||| |||||||| |||||| ||||||||||| | |||||
Sbjct 1262 AGATGGGGCAACTGGAATATATCCACTTTATGAAGATGGACAACCGCCCGTGATAA 1317
Score = 71.3 bits (38), Expect = 2e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1 ATGAGCTCAACTGTTTCAAATCCCCAAGGAATCCTGCAACAAGG 44
||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 133 ATGAGTTCAACTGTTTCAAATCCCCAAGGAATCCTGCAACCAGG 176
> AT3G56440.1 | Symbols: ATATG18D, ATG18D | homolog of yeast autophagy
18 (ATG18) D | chr3:20926001-20928988 FORWARD LENGTH=1656
Length=1656
Score = 1059 bits (573), Expect = 0.0
Identities = 925/1091 (85%), Gaps = 40/1091 (4%)
Strand=Plus/Plus
Query 115 GAAGCAGAGTTGGTTTCTGTGTGTTGGAATCAGGATTCA-AGTTGTTTTGCAGCTGGAAC 173
|||||||||||||||||||| | |||||||||||||| | ||||||||||| ||||| ||
Sbjct 386 GAAGCAGAGTTGGTTTCTGTTTCTTGGAATCAGGATT-ACAGTTGTTTTGCTGCTGGCAC 444
Query 174 GAGTCATGGTTTTCGTATATATAACTGTCAACCTTTCAAGGAAACTTTCAGGCGTGAGCT 233
|| |||||||||||||||||||||||| |||| |||||||||||||| ||||| |||||
Sbjct 445 TAGCCATGGTTTTCGTATATATAACTGTGAACCGTTCAAGGAAACTTTTAGGCGAGAGCT 504
Query 234 AAAGAACGGCGGTTTTAAAATTGTAGAGATGCTTTTCCGAAGCAATATATTGGCACTTGT 293
||| | || || |||||||||||||||||||||||||| || ||||| ||||| |||||
Sbjct 505 GAAGGATGGAGGGTTTAAAATTGTAGAGATGCTTTTCCGGAGTAATATCTTGGCGCTTGT 564
Query 294 TGGTGGTGGACCTAACTCTCAGTACCCTTCAAACAAAGTACTAATTTGGGATGATCATCA 353
|||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||||
Sbjct 565 TGGTGGTGGACCTAACTCCCAGTACCCTTCAAATAAAGTATTGATTTGGGATGATCATCA 624
Query 354 GAGCCGTTGCATCAGTGAATTTGCATTTAGGTCTGAGATTCGTGCTGTGAAATTAAGAAG 413
| | || ||||||||||| ||| | ||| |||| || |||||||| ||||| ||||||||
Sbjct 625 GGGGCGCTGCATCAGTGAGTTTACTTTTCGGTCGGAAATTCGTGCAGTGAAGTTAAGAAG 684
Query 414 GGATCGGATTGTTGTTGTTCTTGAACATAAGATTTATGTTTACAATTTTATGGACCTTAG 473
||||| ||||||||||||||||| || ||||| ||||| |||||||||||||| || ||
Sbjct 685 AGATCGAATTGTTGTTGTTCTTGAGCACAAGATATATGTCTACAATTTTATGGATCTAAG 744
Query 474 ACTTCTTCATCAGATTGAAACCCA-AGCTAATCCTAGAGGATTATGTTGCCTTTCTCATC 532
|||||||||||||||||||| | || ||||| || ||| |||||||||| |||||||
Sbjct 745 ACTTCTTCATCAGATTGAAA-ATATGGCAAATCCAAGGGGACTATGTTGCCTCTCTCATC 803
Query 533 ATTC-T-AATACGTCTGTGC-TCGCTTGCCCCGGTCTTCATCGAGGAGAGATTCGAGTTG 589
| | | ||||| ||||| | | ||||| || ||| ||| |||||||||| | |||||||
Sbjct 804 A--CATGAATACATCTGT-CTTGGCTTGTCCAGGTATTCGTCGAGGAGAGGTCCGAGTTG 860
Query 590 AACATTTCGGGCTTAACATGGTACAAATCATAAATGCTCATGATTCTAGTATTGCGTGTA 649
||||||| |||||||||||||| |||||||| |||||||||||||||| ||| ||||| |
Sbjct 861 AACATTTTGGGCTTAACATGGTTCAAATCATTAATGCTCATGATTCTAATATCGCGTGCA 920
Query 650 TGACTTTGACATTGGATGGTTTGTTGCTCGCAACTGCTAGTACAAAGGGAACTCTGATTA 709
|||| |||||||||||||| ||| | || |||||||| ||||||||||||||||||||||
Sbjct 921 TGACCTTGACATTGGATGGCTTGCTCCTTGCAACTGCCAGTACAAAGGGAACTCTGATTA 980
Query 710 GAATCTTCAACACTATGGACGGAACTCGTTTGCAAGAGGTACGAAGAGGAGTGGACAGAG 769
|||| |||||||| ||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct 981 GAATTTTCAACACGATGGACGGAACTCGTCTGCAAGAGGTCCGAAGAGGCGTGGACAGAG 1040
Query 770 CAGATATTTATAGCATTGCACTTTCACCAAACGTGCAGTGGCTGGCTGTATCAAGCGACA 829
||||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||
Sbjct 1041 CAGATATCTATAGCATTGCTCTATCACCAAACGTGCAGTGGCTTGCAGTATCAAGCGACA 1100
Query 830 AGGGGACTGTTCACATTTTCTCTCTTAGAGTTAGGGT-AGTTGGGGAGGATTCTTATTCC 888
||||||||||||||||||||||||| ||||| || || | | |||||||| | || |||
Sbjct 1101 AGGGGACTGTTCACATTTTCTCTCTCAGAGTGAGAGTTA-TAGGGGAGGACGCATACTCC 1159
Query 889 ACTGAAAATGCAG-CTCTCCTGACACAACAAACTTATTCTACTTCTCTGCAAGGC-CTTG 946
|||||| ||| || || || | || || || | | || ||| | | ||||
Sbjct 1160 ACTGAACATG-AGACT-TCTT--CA-AA-----TT---C--C--CT--GCA-GCCTCTTG 1199
Query 947 TTTCTCCAACCACTGGTACCAATCCC-GGTTCGTCATTGTCGTTTATGAGAGGTGTTCTA 1005
|||||||| ||| |||| |||| ||| |||||||||||||| ||| ||||||||||||||
Sbjct 1200 TTTCTCCAGCCAGTGGTGCCAA-CCCTGGTTCGTCATTGTCTTTTCTGAGAGGTGTTCTA 1258
Query 1006 CCAAAGTATTTCAGCTCGGAATGGTCATATGCACAGTTTCATGTATCAGAAGTCACACAA 1065
||||| |||||||||||||||||||||| | | ||||| |||||| | |||||||| |||
Sbjct 1259 CCAAAATATTTCAGCTCGGAATGGTCATTTTCTCAGTTCCATGTACCTGAAGTCACCCAA 1318
Query 1066 TTCTTCGCAGCATTTGGCAG-TAACAACACGGTTGCTATTATCGGCATGGATGGAAGTTT 1124
| ||| ||||||||||| | | | ||||| |||| ||||| ||| |||| ||||||||
Sbjct 1319 TACTTTGCAGCATTTGGT-GCTCAGAACACAATTGCAATTATTGGCTTGGACGGAAGTTT 1377
Query 1125 TTACAGATGCAGCTTT-GATCCCGTGAACGGAGGAGAGATGGGGCAACTGGAATATTTCC 1183
||||| |||| ||| ||||| |||||||||||||||||| || || ||| ||||||
Sbjct 1378 CTACAGGTGCAA-TTTCGATCCAGTGAACGGAGGAGAGATGACTCAGCTTGAACATTTCC 1436
Query 1184 ACTTTCTGAAG 1194
| |||||||||
Sbjct 1437 ATTTTCTGAAG 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59688448005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5