BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321777
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40900.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1831 0.0
> AT2G40900.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr2:17063122-17065684 REVERSE LENGTH=1629
Length=1629
Score = 1831 bits (991), Expect = 0.0
Identities = 1139/1207 (94%), Gaps = 23/1207 (2%)
Strand=Plus/Plus
Query 1 ATGGGATTAAGGATGTCAGAATCAGCTAAACCTTACTTTGCAATGATCTGTCTTCAGTTC 60
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 171 ATGGGATTAAGGATGTCAGAATCAGCTAAACCTTATTTTGCAATGGTCTGTCTTCAGTTC 230
Query 61 GGATACGCAGGTATGAACCTAGTAACTAAAGCCGTCCTTGACCACGGTATGAGCCATTAC 120
|||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||||
Sbjct 231 GGATACGCAGGTATGAACTTAGTAACTAAAACCGTCCTAGACCGCGGTATGAGCCATTAC 290
Query 121 GTTCTTGTTGCATACCGCAACGCTTTTGCCACAGCCGCTATCGCACCCTTCGCTCTTCTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GTTCTTGTTGCATACCGCAACGCTTTTGCCACAGCCGCTATCGCACCCTTCGCTCTTCTC 350
Query 181 TCCGAAAGGAAAGTGAGATCAAAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TCCGAAAGGAAAGTGAGATCAAAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTT 410
Query 241 GCTCTTCTCGGGCCTGTGATTGATCAGAACTTATACTACATCGGTCTGAAACTCACATCA 300
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 411 GCTCTTCTCGGGCCGGTGATTGATCAGAACTTATACTATATCGGTCTAAAACTCACATCA 470
Query 301 CCGACGTTTTCCACCGCCGTTAGCAACATCGTGCCTGCACTTACCATTATCCTTGCCACA 360
|| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 471 CCAACGTTTTCCTCCGCCGTTAGCAACATCGTGCCTGCAATTACCATTATCCTTGCCACA 530
Query 361 CTTTTCAGGATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTAGTAAAAGTGATGGGG 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 531 CTTTTCAGGATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTGGTAAAAGTGATGGGG 590
Query 421 ACTTTAGTGACAGTGGTTGGATCCATATTGATGATATTCTACAAAGGTCCTTTCATTAAT 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 ACGTTAGTGACAGTGGTTGGATCCATATTGATGATATTCTACAAAGGTCCTTTCATTAAT 650
Query 481 TTCTTCCGATCTCACCTCACCCCCGCCTCCTCGCCGCCGACGGCTGACTATCTTAAGGCT 540
|||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 651 TTCTTCCGGTCTCACCTCACGGCCGCCTCTTCGCCGCCGACGGCTGACTATCTTAAGGCT 710
Query 541 GCCGTCTTCCTACTCCTCGCTTCCCTCTCATGGGCTTCGTTCTTTGTTCTTCAGGCTGCG 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 711 GCCGTCTTCCTACTCCTCGCTTCCCTCTCATGGGCGTCGTTCTTTGTTCTTCAGGCTGCG 770
Query 601 ACTTTGAAGAAATACTCAGCCCATCTCTCGTTGTCAACAATGGTGTGTTTCATGGGAACG 660
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 771 ACTTTGAAGAAATACTCAGCCCATCTCTCAATGTCAACAATGGTGTGTTTCATGGGAACG 830
Query 661 TTACAGTCTTTAGCCCTAGCCTTCGTAATGGAACACAATCCTTCCGCTTTAAACATCGGT 720
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 831 TTACAGTCTTTAGCCCTAGCCTTCGTAATGGAACACAATCCTTCTGCTTTGAACATCGGT 890
Query 721 TTTGACATGAACCTTCTCGCTTCTGCCTACGCGGGAATAATGTCGTCGAGCATAGCTTAC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TTTGACATGAACCTTCTCGCTTCTGCCTACGCGGGAATAATGTCGTCGAGCATAGCTTAC 950
Query 781 TACGTTCAAGGACTTATGATACAGCGAAAAGGACCGGTCTTTGTCACTGCTTTTAACCCT 840
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 951 TACGTTCAAGGACTTATGATGCAGCGAAAAGGACCGGTCTTTGTCACTGCTTTTAACCCT 1010
Query 841 CTTGCCGTCGTCATTGTCTCCATAATGAGCTTCTTCGTTCTCGGTCAAGGAATCTACCTT 900
||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1011 CTTATCGTTGTCATTGTCTCCATCATGAGCTTCTTCGTTCTCGGTCAAGGAATCTACCTT 1070
Query 901 GGAGGGTACGTTAACAACAACCGGGTTATTGGAGTGGTTGTTTTGACGGGGGGAGTGTAC 960
|||||| |||| || |||||||||||||||| || |||||| |||
Sbjct 1071 GGAGGG---GTTA------------TT---GGAGTGGTTGTTTTGATGGTGGGAGTCTAC 1112
Query 961 GCCGTGTTATGGGGAAAACATGTAGATGATGACGGAGAAGAAACACGCCATGAAGATAAC 1020
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1113 GCCGTGTTATGGGGCAAACATGTAGATGATGACGGCGAAGAAACACGCCATGAAGATAAC 1172
Query 1021 GTTTTAGAAGCCATTAATTGTTGTAGTGGCAATAATGGTCTAACGATAATGCCGAAAATC 1080
||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 GTTGTAG---CCGTTAAGTGTTGTAGTGGCAATAATGGTCTAACGATAATGCCGAAAATC 1229
Query 1081 GACGAAGCTGATGAGGAGGATGTTGAAACAGGAAAAG-TAACGGCGGAGAAGGAGTCGTC 1139
||||||||||||||||||||||||||||| ||||| | || || ||||||||||||||||
Sbjct 1230 GACGAAGCTGATGAGGAGGATGTTGAAACCGGAAAGGCTA-CGTCGGAGAAGGAGTCGTC 1288
Query 1140 AGTTCCGGAAGTAGTGGTGGTGGTTTTTTGTAGTGGAAATGTGGATAACGTTTCACGACC 1199
|||||||||||| |||||||| ||||||||||||| ||||||| ||| ||||||||||||
Sbjct 1289 AGTTCCGGAAGTGGTGGTGGTAGTTTTTTGTAGTGAAAATGTGCATAGCGTTTCACGACC 1348
Query 1200 TAATTAG 1206
||| |||
Sbjct 1349 TAACTAG 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5