BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321778
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40910.1 | Symbols: | F-box and associated interaction doma... 1890 0.0
AT2G40925.1 | Symbols: | F-box and associated interaction doma... 854 0.0
AT2G40920.1 | Symbols: | F-box and associated interaction doma... 161 1e-38
> AT2G40910.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:17069868-17071657 REVERSE LENGTH=1523
Length=1523
Score = 1890 bits (1023), Expect = 0.0
Identities = 1252/1361 (92%), Gaps = 22/1361 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAGAAGAAGGAGGGATTTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAACGTCAG 60
||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 104 ATGAAGAGAAGGAGGAGGGATCTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAATGTCAG 163
Query 61 AGCATTGCCCACGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGATAATGGATGTAAAA 120
||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 164 AGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGATAATGGATGAAAAA 223
Query 121 GGATGTTATAACTCATTAGCATTGTTTCCAGCCCAATTTCCTAT-CATACGAG-AG-AGA 177
||| | | ||||||||||||||| |||| ||| || ||||||| | | | | || | |
Sbjct 224 GGA-G--ACAACTCATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACA 280
Query 178 AGAAAAAGGAGAAAATATATGTGCGAGATTCCTTCGGATCTCTTGATGGAAATTGTTATG 237
|| | || |||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 281 CGAGAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTGTTATG 340
Query 238 AGATTGCCAGCAAAGTCCATGGTGAGGTTCAAGTGCATCTCCAAGCAGTGGTCATC-CTT 296
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 341 AGATTGCCAGCAAAGTCCATGGTGAGGTTCAAATGCATCTCCAAGCAGTGGTCATCTCT- 399
Query 297 CATCTCTTGTCGATATTTTTGTAACCGTTTATTTACTACTGTCACACGACAACAACAACC 356
||||||||||||||||||||| ||| ||||||||||| ||||||||||| || |||||||
Sbjct 400 CATCTCTTGTCGATATTTTTGCAACAGTTTATTTACTTCTGTCACACGAAAAAAACAACC 459
Query 357 ACA-AGTATACATGTGTTTAGTGGACCAAGGCGGGCAACGTGTGCTGCTATCCTTATCAT 415
||| | || |||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 460 ACATA-TACACATGTGTTTAGTGGATCACGGCGGGCAACGTGTGCTGCTATCATTATCAT 518
Query 416 CAACGTCTCCAGACAACACTTGTTATGTGGTCGACCAAGATTTGAGCATCACTGGGATGG 475
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 519 CAACGTCTCCAGACAACACTTGTTATGTGGTCGACCAAGATTTGAGCCTCACAGGAATGG 578
Query 476 GAGGCTTCTTCTTGAATGCT-GTCCGTGGCTTGTTGTGTTTCTCAGTAAGAAAAAAGGCA 534
||||||||||||||||| || |||||||||||||||||||||||||| ||| ||||||||
Sbjct 579 GAGGCTTCTTCTTGAAT-CTTGTCCGTGGCTTGTTGTGTTTCTCAGTTAGAGAAAAGGCA 637
Query 535 TGTATCTATAATCCCACCACTAGACAGCTCTTGACCTTACCCGCTATAAAATCCGACATC 594
||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 638 TGTATCTATAACCCCACCACTAGACAGCGCTTGACCTTACCCGCAATAAAATCCGACATC 697
Query 595 ATTGCTC-AACAAGGTGAAAGGAAGGATATCCGGTATTATATCGGACACGATCCTGTTAA 653
|| |||| || ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 698 ATAGCTCTAA-AAGATGAAAGGAAGGATATCCGGTATTATATCGGGCACGATCCTGTTAA 756
Query 654 TGATCAATACAAACTAGTCTGCACGATTGTGACATCCTCTGCATTTTTCAAAAATGTAAA 713
|||||| |||||||||||||||||||||| || ||||||||||||||||| |||| ||||
Sbjct 757 TGATCAGTACAAACTAGTCTGCACGATTGGGATATCCTCTGCATTTTTCACAAATCTAAA 816
Query 714 GTCAGAGCATTGGGTCTTTGTACTAGAGGCGGGAGGTTCCTGGAGAAAGGTT-GTTCCGC 772
||||||||||||||||||||| ||||| || |||||||| |||||||||||| || | ||
Sbjct 817 GTCAGAGCATTGGGTCTTTGTTCTAGAAGCTGGAGGTTCGTGGAGAAAGGTTCGTAC-GC 875
Query 773 TGGAGAATTACCATCCTCATGCTCCTGCCACAGTAGGACAGTTTATCAATGGATCGGTAG 832
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 876 TGGAGAGTTACCATCCTCATGCTCCTTCCACAGTAGGACAGTTTATCAATGGATCGGTAG 935
Query 833 TACATTATATGGCTTGGCTTGATATGGACACTTGTGTTGTTGTGAGTTTCGACATGACGT 892
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 936 TATATTATATGGCTTGGCTTGATATGGACACTTGTGCTGTTGTGAGTTTCGACATTACGT 995
Query 893 CTGAAGAGTTGACTACCATCCTAGTACCTC-AGGAAGCCGGGGATGTGGCTCTGCCTGCA 951
|||||||||||||||||||| ||||| ||| || | ||||||||||||||||||||||||
Sbjct 996 CTGAAGAGTTGACTACCATCATAGTAACTCTAG-AGGCCGGGGATGTGGCTCTGCCTGCA 1054
Query 952 GCTAGGATGAAGGCGGGTCTTATAGAGTATGATGGGAAAATAGCTGTTTTCGATCACACC 1011
| |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1055 GGTAGGATGAAGGCGGGTCTTATACAGTATCATGGGGAAATAGCTGTTTTCGATCACACC 1114
Query 1012 CACCTCAAAGAAAAGTGTT-TGGTGGATTTATGGGTATTGAAAGACGCTGGGAAGAAGGA 1070
|| ||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |
Sbjct 1115 CATCTCAAAGAAAAGT-TTCTGGTGGATTTATGGGTATTGAAAGACGCTGGGATGAAG-A 1172
Query 1071 A-TGGTCGAAGAAGAGGCTGTTTTTAAAGCCTTGTCAAAAGCATTTAGTCCATGATGACA 1129
| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1173 AGTGGTCGAAGAAGAGGCTGGTTTTACAGCCTTGTCAAAAGCATTTAGTCCATGATGACA 1232
Query 1130 TTGAACTGATCGTAAAAGGTACAACTGAAGATGGCAAGGTTATCTTGGCACCGGTGAAGA 1189
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 1233 TTGAACTGGTCGTAAAAGGTACAACTCAAGATGGCAAGGTTATCTTGGCACCGGTAAACA 1292
Query 1190 TGCATTCTCAATTCTATATTCTGTGTTACGATATGGTAAGCAATGACCTGAGGAAGGTTA 1249
|| ||||||||| |||||| ||||||||||||||| |||||||||||| || ||||||
Sbjct 1293 TGTGTTCTCAATTATATATTTTGTGTTACGATATGGGAAGCAATGACCTAAGAAAGGTTG 1352
Query 1250 AAATCAAAGGAGTACTAGACATTTGGTTTGGTAAGGAGTGCTATTTCGACTTGAAGTACT 1309
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1353 AAATCAAAGGAGTACCAGACATTTGGTTTGATAAGGAGTGCTATTTCGACTTGAAGTACT 1412
Query 1310 CTATGGATGAGAGTGAGGCCGTCATCTACTTGGAAACTTGA 1350
|| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1413 CTCTGGATGAGAGTGAGGACGTCATCTACTTGGAAACTTGA 1453
> AT2G40925.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:17074905-17076239 REVERSE LENGTH=1335
Length=1335
Score = 854 bits (462), Expect = 0.0
Identities = 957/1185 (81%), Gaps = 78/1185 (7%)
Strand=Plus/Plus
Query 199 TGCGAGATTCCTTCGGATCTCTTGATGGAAATTGTTATGAGATTGCCAGCAAAGTCCATG 258
|||||||| ||| | |||||| |||| |||||| |||| ||||||||| |||||||| |
Sbjct 196 TGCGAGATCCCTCCTGATCTCATGATAGAAATTCTTATAAGATTGCCAACAAAGTCCTTT 255
Query 259 GTGAGGTTCAAGTGCATCTCCAAGCAGTGGTCA-TCCTTCATCTCTTGTCGATATTTTTG 317
|||||||||||||| |||| |||||||||||| |||| |||||| |||||||||||||
Sbjct 256 ATGAGGTTCAAGTGCGTCTCAAAGCAGTGGTCACCCCTT-ATCTCTGGTCGATATTTTTG 314
Query 318 TAACCGTTTATTTACTACTGTCACACGACAACAACAAC--C-A-CAAG--TATACATGTG 371
||||||||||||||| ||| |||||||||||||||| | | || | ||||||||||
Sbjct 315 CAACCGTTTATTTACTTGTGTAACACGACAACAACAACAACAACCACGTCTATACATGTG 374
Query 372 TTTAGTGGACC-AAGGCGGGCAACGTGTGCTGCTATCCTTATCATCAACGTCTCCAGACA 430
|||||||| || ||| | |||| |||| | ||| | ||||||||||||| || ||||
Sbjct 375 TTTAGTGG-CCAAAGACAAGCAA--TGTG-TTCTA--C-TATCATCAACGTCACCGGACA 427
Query 431 ACACTTGTTATG---TGGTCGACCAAGATTTGAGCATCACTGGGATGGGAGGCTTCTTCT 487
||||||||| || | ||||||||||||||||||||| | || | | |||||||
Sbjct 428 ACACTTGTTTTGTACTCGTCGACCAAGATTTGAGCATC-CCAGGCT---A--CTTCTTC- 480
Query 488 TGAATGCTG-TCCGTGGCTTGTTGTGTTTCTCAG-TAAGAAAAAAGGCATGTATCTATAA 545
| | ||| ||| ||||||| |||||||| ||| | ||| |||||| |||||||||||
Sbjct 481 -GCCT-CTGTTCC-TGGCTTGCTGTGTTTC-CAGTTCGGAACAAAGGCGTGTATCTATAA 536
Query 546 TCCC-ACCACTAGACAGCTCTTGACCTTACCCGCTATAAAATCCGACATCATTGCTCAAC 604
||| | ||| | ||| ||||||||||||||| | ||||||||||||||| |||||||
Sbjct 537 -CCCTAGCACCAAACAACTCTTGACCTTACCCTCCGTAAAATCCGACATCACAGCTCAAC 595
Query 605 AAGGTGAAAGGAAGGA-TATCCGGTATTATATCGGACACGATCCTGTTAATGATCAATAC 663
||||| || ||| || || || || ||||| |||| ||||||||||||||||||||||
Sbjct 596 AAGGTCAACTGAA-GACTACCCAATACTATATTGGACGCGATCCTGTTAATGATCAATAC 654
Query 664 AAACTAGTCTGCACGATTGTGACATCCTCTG-CATT-TTT-CAAAAATGTAAAG-TCAGA 719
|||||||||||||| ||| ||| || ||| | ||| ||| |||| ||| || |||||
Sbjct 655 AAACTAGTCTGCACTATTCTGATATACTC-GAAATTGTTTGCAAACATG---AGCTCAGA 710
Query 720 GCATTGGGTCTTTGTACTAGAGGC-GGGAGGTTCCTGGAGAAAGGTTGTTCCGCT-GGAG 777
|||||||||||| |||||| | ||||||||||||| ||| |||||||| || |||
Sbjct 711 GCATTGGGTCTTCACACTAGA-ACTTGGAGGTTCCTGGAAAAAAGTTGTTCCACTGGGA- 768
Query 778 AATTACCATCCTCATGCTCCTGCCACAGTAGGACAGTTTATCAATGGATCGGTAGTACAT 837
||||| ||||| |||||||||||||||| ||||| || |||| ||||| |||||||||
Sbjct 769 AATTATCATCCCCATGCTCCTGCCACAGCAGGACGGTCTATCGATGGA---GTAGTACAT 825
Query 838 TATATGGCTTGGCTTGATATGGACACTTGTGTTGTTGTGAGTTTCGACATGACGTCTGAA 897
||| | || ||| ||||| || ||| |||| |||||||||||| |||| | |||||||
Sbjct 826 TATCTAGCCTGGGTTGATTTGTACAAGTGTGCGGTTGTGAGTTTCAACATTAGGTCTGAA 885
Query 898 GA-GTTGACTACCATCCTAGTACCTCAGG-AAGCCGGGGATGTGGCTCTGCCTGCAGCT- 954
|| ||| |||||| ||||| |||||| || || | |||||||| || |||||||| ||
Sbjct 886 GAGGTT-ACTACCTTCCTATTACCTC-GGAAAATCTGGGATGTGCCTGTGCCTGCA-CTG 942
Query 955 AGGATGAAGGCGGGTCTTATAGAGTATGATGGGAAAA-TAGCTGTTTTCGA-TCACACCC 1012
| ||||||||||| |||||||||||||||| |||||| |||| ||||| | ||| | |
Sbjct 943 ATGATGAAGGCGGATCTTATAGAGTATGAT-GGAAAATTAGCAATTTTC-AGTCATAGCT 1000
Query 1013 ACCTCAAAGAAAAGTGTTTGGTGGATTTATGGGTATTGAAAGACGCTG--GG-AAGAAGG 1069
|||| ||||| || ||||||| || |||||||||||||||||||||| || ||||||
Sbjct 1001 ACCTTAAAGACGAGGGTTTGGTAGAATTATGGGTATTGAAAGACGCTGCTGGGAAGAAGA 1060
Query 1070 AATGGTCGAAGAAGAGGCTGTTTTTAAAGCCTTGTCAAAAGCATTTAGTCCATGATGACA 1129
||||||| || | || ||| |||| ||||||| |||| |||||||||||||| | ||
Sbjct 1061 AATGGTCCAATATGATCCTGGTTTTGCAGCCTTGCCAAAGGCATTTAGTCCATG--G-CA 1117
Query 1130 TTGAACTGATCGTAAAAGGTACAACTGAAGATGGCAAGGTTAT-CTTGGCACCGGTGAAG 1188
|||| |||||||||||||||||||| |||| ||||||||||| || | |||| || ||
Sbjct 1118 TTGATTTGATCGTAAAAGGTACAACTCAAGACGGCAAGGTTATACT-GTCACCCTTGGAG 1176
Query 1189 ATGCATTCTCAATTCTATATTCTGTGTTACGATATGGTAAGCAATGACCTGAGGAAGGTT 1248
|||| |||||| ||||| ||||||||||| ||| || || |||||| |||| ||||||
Sbjct 1177 ATGCGTTCTCAGTTCTACATTCTGTGTTATGATGTGCAAAACAATGATTTGAGAAAGGTT 1236
Query 1249 AAAATCAAAGGAGTACTA-GACATTTGGTTTGG-TAAGGAGTGCTATTTCGACTTGAAGT 1306
|||||| |||||||| | | | ||||||| | ||| || ||| |||| ||||||||||
Sbjct 1237 GAAATCACAGGAGTACCACGCC-TTTGGTT-GCATAAAGAATGCAATTTTGACTTGAAGT 1294
Query 1307 ACTCTATGGATGAGAGTGAG-GCCGTCATCTACTTGGAAACTTGA 1350
| |||||||||||||||| || ||||||||||||||| ||||
Sbjct 1295 --T-TATGGATGAGAGTGAGAGCT-TCATCTACTTGGAAATTTGA 1335
> AT2G40920.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:17072464-17074164 REVERSE LENGTH=1585
Length=1585
Score = 161 bits (87), Expect = 1e-38
Identities = 99/105 (94%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAGAAGAAGGAGGGATTTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAACGTCAG 60
|||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 153 ATGAAGAGAAGAAGGAAGGATCTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAATGTCAG 212
Query 61 AGCATTGCCCACGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG 105
||||||||||| |||||||||||| |||||||||||||| |||||
Sbjct 213 AGCATTGCCCAGGTCGTCTCTCTCGGAGATTCCGATCAAATTCAG 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5