BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321788

Length=807
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41000.2 | Symbols:  | Chaperone DnaJ-domain superfamily pro...   682    0.0  


> AT2G41000.2 | Symbols:  | Chaperone DnaJ-domain superfamily protein 
| chr2:17111445-17112557 FORWARD LENGTH=889
Length=889

 Score =  682 bits (369),  Expect = 0.0
 Identities = 443/476 (93%), Gaps = 16/476 (3%)
 Strand=Plus/Plus

Query  256  GTTCTAGGCGTTACGAAG-AACGCGACGAAGAAGGAGGTTAAAGATGCGTTTCGGAGATT  314
            ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||
Sbjct  247  GTTCTAGGCGTTACG-AGAAACGCGACGAAGAAGGAGGTTAAAGATGCGTTTAGGAGATT  305

Query  315  GGCGATTAAGTATCATCCGGATAAGCACGCCCAGTCTCCGGAGCATGTTCGTCGA-AACG  373
            |||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||
Sbjct  306  GGCGATTAAGTATCATCCGGATAAGCACGCTCAGTCTCCGGAGCATGTTCGTC-ATAACG  364

Query  374  CCACCGTGCGGTTTAAGCTTGTATCGGAGGCGTACGAAGTTTTGAACGATGATATGAAAC  433
            |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct  365  CCACCGTGCGGTTTAAGCTTGTATCGGAGGCGTACGAAGTTTTGAATGATGATCTGAAAC  424

Query  434  GCGCGTCTTATAACGCTGGTAGCGATTCAGATTGCTTTCGTCGTACGAGCGGTTCGTATA  493
            |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct  425  GCGCGTCTTATAACGCTGGTAGCGATTCTGATTGCTTTCGCCGTACGAGCGGTTCGTATA  484

Query  494  GTAATCCGTATGGAAATCGTAGTGGTAGAGCGTA---T---GGTTACGGTTATGGTTA--  545
            |||||||||||||||||||| |||| |||||| |   |   |||||||||||||||||  
Sbjct  485  GTAATCCGTATGGAAATCGTGGTGGCAGAGCGCAAGGTTCTGGTTACGGTTATGGTTATG  544

Query  546  ----CTCTACGAGGAATCGTCAGACCCCTAGCTTCAGCAGCGGATTTGATTCAACGTTTC  601
                ||||||||||||||||||| || |||||||||||||||| |||||||| |||||||
Sbjct  545  GTTACTCTACGAGGAATCGTCAGGCCTCTAGCTTCAGCAGCGGGTTTGATTCGACGTTTC  604

Query  602  GTTATTTGACTACGCGAGCGTTTCTACTGAATCTCGCATTAGCTGGTGGTTTGTACTTTG  661
            |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  605  GTTATTTGACTACGCGAGCGTTTCTATTGAATCTCGCATTAGCTGGTGGTCTGTACTTTG  664

Query  662  CATTTTCTGCGATTGATACAAGCGGAGAAACACTATGGAAAATGCGTAACTCAGGG  717
            | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  665  CGTTTACTGCGATTGATACAAGCGGAGAAACACTATGGAAAATGCGTAACTCAGGG  720


 Score = 75.0 bits (40),  Expect = 1e-12
 Identities = 42/43 (98%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  209  AGCAATCGCGGATCTCAATTTCAGGTGTTTGCGATTCCGATTT  251
            |||| ||||||||||||||||||||||||||||||||||||||
Sbjct  159  AGCAGTCGCGGATCTCAATTTCAGGTGTTTGCGATTCCGATTT  201



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39283102954


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5