BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321802
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41160.1 | Symbols: | Ubiquitin-associated (UBA) protein | ... 1393 0.0
> AT2G41160.1 | Symbols: | Ubiquitin-associated (UBA) protein
| chr2:17156029-17158880 REVERSE LENGTH=1342
Length=1342
Score = 1393 bits (754), Expect = 0.0
Identities = 828/864 (96%), Gaps = 3/864 (0%)
Strand=Plus/Plus
Query 1 ATGAACGGAGGTCCTTCCGGTTTCCATAATGCTCCGGTCACGAAAGCCTTCGTCATCGCG 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 194 ATGAACGGAGGTCCTTCCGGTTTCAATAATGCTCCGGTCACGAAAGCCTTCGTCATCGCG 253
Query 61 ACTGCTCTTTTCACTGTGTTCTTCGGGATCCGGGGAGGTTCTTCCAAGCTCGGTTTGTCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 254 ACTGCTCTTTTCACTGTGTTCTTCGGGATCCGGGGAGGTTCTTCCAAGCTCGGCTTATCT 313
Query 121 TACCAGGATATCTTTGAGAAGTTTCGGATTTGGAAGTTAATTATATCGGCTTTTGCGTTC 180
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 314 TACCAGGATATTTTTGAGAAGTTTCGGATTTGGAAGTTAATTATATCGGCTTTTGCCTTC 373
Query 181 TCGTCCACAACAGAATTGTTTTCTGGCTTGTATCTGCTCTACTTCTTCCGAGTCTTTGAG 240
||||||||||| ||||| |||||||||| ||| |||| |||||||||||||||||||||
Sbjct 374 TCGTCCACAACTCAATTGCTTTCTGGCTTATATTTGCTATACTTCTTCCGAGTCTTTGAG 433
Query 241 AGACAGATTGGTTCAAATAAGTATTCGGTTTTCATCTTGTTCTCTGGATTTGTATCACTA 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 434 AGACAGATTGGTTCAAATAAGTATTCGGTTTTCATCTTCTTCTCTGGATTTGTATCACTA 493
Query 301 ATACTAGAGACCATTTTGTTATCACTGACTAAAGATCCTACTGCAAACCTCCTGACATCT 360
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 494 ATACTAGAGACCATTTTGTTATCATTGACTAAAGATCCTACTGCAAACCTACTGACATCT 553
Query 361 GGACCATACGCCCTTGTATTTGCTTCGTTTGTACCCTTCTTCTTGGACATTCCAGTTACA 420
|||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 554 GGACCATACGCCCTCGTATTCGCTTCTTTTGTACCCTTCTTCTTGGATATTCCAGTTACA 613
Query 421 AAGAGGTTTGGTGTATTGGGCGTCCACTTCTCTGATAAATCATTCATATATCTTGCAGGT 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 614 AAGAGGTTTGGTGTATTGGGCGTCCACTTCTCTGATAAATCATTCATATACCTTGCAGGT 673
Query 481 GTCCAGCTTTTACTATCATCTTGGAAAAGATCCATATTTACTGGAATTTGTGGCATAATT 540
|||||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||||
Sbjct 674 GTCCAGCTTTTACTATCATCATGGAAAAGGTCCATCTTTACTGGAATTTGCGGTATAATT 733
Query 541 GCTGGTTCCTTGTATCGGTTGAACATCTTTGGTATTCGCAAGGCAAAGTTCCCGGAGTTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GCTGGTTCCTTGTATCGGTTGAACATCTTTGGTATTCGCAAGGCAAAGTTCCCGGAGTTC 793
Query 601 CTGGCTTCGTTATTCTCCCGGTTTTCCTTACCCTCCTTGAGCAGCCATTCTCAACCACCA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 ATGGCTTCGTTATTCTCCCGGTTTTCCTTACCCTCCTTGAGCAGCCATTCTCAACCACCA 853
Query 661 AGAAGGACCTCACCTAACTTAGGTCGTCAAGCA---AGAGCTTATCGAGCCCCAATGCCG 717
|||||||| ||||| ||||||||||| |||||| |||||||||||||| |||||||||
Sbjct 854 AGAAGGACATCACCCAACTTAGGTCGCCAAGCAGTGAGAGCTTATCGAGCTCCAATGCCG 913
Query 718 TCAACTACAGAGCCATCTGAGGAAGCCATAGCTACTTTGGTATCTATGGGATTTGACCAG 777
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TCAACTACAGAGCCATCAGAGGAAGCCATAGCTACTTTGGTATCTATGGGATTTGACCAG 973
Query 778 AACGCAGCGAGACAGGCGCTTGTACACGCCAGAAATGATATCAACGCTGCCACCAATATC 837
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 974 AATGCAGCGAGACAGGCGCTTGTACACGCCAGAAATGATGTCAACGCTGCCACCAACATC 1033
Query 838 CTTCTTGAAGCACACTCTCACTAA 861
||||||||||||||||||||||||
Sbjct 1034 CTTCTTGAAGCACACTCTCACTAA 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5