BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321816
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41300.1 | Symbols: SSL1 | strictosidine synthase-like 1 | c... 1687 0.0
> AT2G41300.1 | Symbols: SSL1 | strictosidine synthase-like 1 |
chr2:17214237-17216292 REVERSE LENGTH=1260
Length=1260
Score = 1687 bits (913), Expect = 0.0
Identities = 1048/1114 (94%), Gaps = 6/1114 (1%)
Strand=Plus/Plus
Query 1 ATGCCGGTCAGTCGGAAAGTTCAAACGTGGGCCG-TTGTGGCGGCAGTTATGGCCGTCCT 59
|||||| ||||||||||| ||| ||||||||||| || ||| |||| ||||||||||| |
Sbjct 77 ATGCCGATCAGTCGGAAAATTCTAACGTGGGCCGCTT-TGGTGGCAATTATGGCCGTCTT 135
Query 60 GGTCGTCTTTGTCGGTCCATACATCATCGGACCGGAAAGTATAGAGGGCTCGAAAAACGT 119
||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 136 GGTCGTCTTAGTGGGTCCATACATCATTGGACCGGAGAGTATAGAGGGCTCGAAAAACGT 195
Query 120 CCTAACCATGGCGAGGACAATCCCCCTTCCCGTGGATGGACCGGAGAGCCTGGACTGGGA 179
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 196 CCTAACCACAGCGAGGACAATCCTCCTTCCCGTGGATGGACCGGAGAGCCTGGACT-GGA 254
Query 180 CCCAAGAGGGGAAGGCCCATACGTTGGCGTAACTGACGGTCGCATCCTCAAATGGAGCGG 239
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 255 CCCAAGAGGAGAAGGCCCATACGTTGGCGTCACTGACGGTCGCATCCTCAAATGGAGCGG 314
Query 240 TGAAGATCTTGGCTGGGTCCAATTTGCCTACTCATCTCCCCACAGAGAGAACTGTTCGAG 299
|||||||||||||||| | |||| ||||||||||||||||| ||| | || ||||||||
Sbjct 315 TGAAGATCTTGGCTGGATTGAATTCGCCTACTCATCTCCCCATAGAAAAAATTGTTCGAG 374
Query 300 CCATAAGGTGGAACCTGCGTGTGGGAGGCCTTTGGGACTTAGCTTCGAGAAGAAAACGGG 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 375 CCATAAGGTGGAACCTGCGTGTGGAAGGCCTTTGGGACTTAGCTTCGAGAAGAAATCGGG 434
Query 360 AGATTTGTATTTTTGCGACGGTTACTTAGGGATAATGAAGGTCGGGCCTAAAGGAGGATT 419
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 435 AGATTTGTATTTTTGCGACGGTTACTTAGGGGTAATGAAGGTTGGGCCTAAAGGAGGATT 494
Query 420 GGCCGAGAAGGTCGTGGACGAGGCCGAAGGCCAGAAAGTTATGTTTGCAAACCAAATGGA 479
||| ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 495 GGCTGAGAAAGTCGTGGACGAGGTCGAAGGTCAGAAAGTTATGTTTGCAAACCAAATGGA 554
Query 480 TATAGATGAGGAAGAGGATGCTATCTACTTCAACGATAGTAGCGATACCTACCACTTCGG 539
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |
Sbjct 555 TATAGATGAAGAAGAGGATGCTATCTACTTCAACGATAGCAGCGATACGTACCACTTC-G 613
Query 540 CAGGGACGTATTCTACGCGTTTCTTTGCGGCGAAAAGACGGGAAGAGCGATTCGATACGA 599
|||||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||
Sbjct 614 --GGGACGTATTCTACGCTTTTCTGTGCGGTGAAAAGACAGGAAGAGCAATTCGATACGA 671
Query 600 CAAGAAGACGAAAGAAGCCAAAGTTATAATGGACCGTCTTCATTTCCCTAATGGTCTTGC 659
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 CAAGAAGACAAAAGAGGCCAAAGTTATAATGGACCGTCTTCATTTCCCTAATGGTCTTGC 731
Query 660 CTTAAGCAAAGATGGTTCGTTCGTGCTTTCATGTGAGGTTCCAACGCAACTTGTGCATCG 719
|||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 732 CTTAAGCATAGATGGTTCGTTCGTGCTTTCTTGTGAGGTCCCAACGCAACTTGTGCATCG 791
Query 720 ATATTGGGCCAAGGGACCAAAAGCCGGGACTCGTGACATATTCGCAAAGCTCCCTGGCTA 779
|||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||
Sbjct 792 ATATTGGGCCAAGGGACCCAACGCCGGGACCCGTGACATATTTGCAAAGCTCCCTGGCTA 851
Query 780 CGCTGATAACATCAGAAGGACCGAGACAGGGGATTTCTGGGTTGCCTTGCATTCCAAGAA 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 CGCAGATAACATCAGAAGGACCGAGACAGGGGATTTCTGGGTTGCCTTGCATTCCAAGAA 911
Query 840 AACTCCCTTTTCAAGGTTATCTATGATCCACCCATGGGTGGGGAAATTTTTCATAAAGAC 899
|||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 912 AACTCCATTTTCGAGGTTATCTATGATCCACCCGTGGGTTGGGAAATTCTTCATAAAGAC 971
Query 900 GTTGAAGATGGAGCTCTTGCTTTTTCTTTTCGAAGGAGGGAAGCCTCACGCCGTGGCTGT 959
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 972 GTTGAAGATGGAGCTCTTGGTTTTTCTTTTTGAAGGAGGGAAGCCTCACGCCGTGGCTGT 1031
Query 960 GAAACTTTCTGGCAAGACTGGAGAGGTTATGGAGATTCTTGAGGATAGTGAAGGGAAGAA 1019
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1032 GAAACTTTCTGGCAAGACTGGAGAGATTATGGAGATTCTTGAGGATAGTGAAGGGAAGAA 1091
Query 1020 TATGAAGTTTATAAGTGAGGTTCAAGAGAGAGATGGTAGGCTCTGGTTTGGGTCTGTGTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TATGAAGTTTATAAGTGAGGTTCAAGAGAGAGATGGTAGGCTCTGGTTTGGGTCTGTGTT 1151
Query 1080 TCTGCCTTCAGTTTGGGTTCTTGACCGTCAGTGA 1113
| ||||||| |||||||||||||||||||| |||
Sbjct 1152 TTTGCCTTCGGTTTGGGTTCTTGACCGTCAATGA 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5