BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321853
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41690.1 | Symbols: AT-HSFB3, HSFB3 | heat shock transcripti... 1127 0.0
> AT2G41690.1 | Symbols: AT-HSFB3, HSFB3 | heat shock transcription
factor B3 | chr2:17381723-17382577 FORWARD LENGTH=735
Length=735
Score = 1127 bits (610), Expect = 0.0
Identities = 701/744 (94%), Gaps = 9/744 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGATGCTGGTGAACATTCACGGTGTAGCGATAACATTAACGACGAGGAGCGTTTG 60
|||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 1 ATGGAAGATGCTGGTGAACATTTACGGTGTAACGATAACGTTAACGACGAGGAGCGTTTG 60
Query 61 CCATTGGAGTTTATGATCGGAAAGTCAACATCCACGGCGGAGCTAGAGCCGCCACCACCG 120
||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 61 CCATTGGAGTTTATGATCGGAAACTCAACATCCACGGCGGAGCTACAGCCG------CCT 114
Query 121 CCACCGTTCTTGGTAAAGACATACAAAGTGGTGGAGGATCCGACAACGAACGAGGTTATA 180
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 115 CCACCGTTCTTGGTAAAGACATACAAAGTGGTGGAGGATCCGACGACGGACGGGGTTATA 174
Query 181 TCTTGGAACGAAGACGGAACTGGCTTCGTCGTGTGGCAGCCGGCAGAATTCTCTAGAGAT 240
|||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 175 TCTTGGAACGAATACGGAACTGGTTTCGTCGTGTGGCAGCCGGCAGAATTCGCTAGAGAT 234
Query 241 CTGGTACCGACACTTTTCAAGCATTGCAACTTCTCTAGCTTCGTTCGGCAGCTCAATACT 300
||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 235 CTGTTACCAACACTTTTCAAGCATTGCAACTTCTCTAGCTTCGTTCGCCAGCTCAATACT 294
Query 301 TACGGGTTTCGAAAAGTAACGACGATAAGATGGGAATTTAGTAATGAGATGTTTCGAAAG 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TACGGTTTTCGAAAAGTAACGACGATAAGATGGGAATTTAGTAATGAGATGTTTCGAAAG 354
Query 361 GGGCAAAGAGAGCTTATGAGCAATATCCGAAGAAGGAAGAGCCAACATTGGTCACACAAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GGGCAAAGAGAGCTTATGAGCAATATCCGAAGAAGGAAGAGCCAACATTGGTCACACAAC 414
Query 421 AAGTCTCATTATCAGGTTGTATCAACAACAACGACGGTGAAGCAAGAAGATCATCAACGG 480
|||||| || | ||||||||| |||||||||||| |||||| ||||||| ||||||||||
Sbjct 415 AAGTCTAATCACCAGGTTGTACCAACAACAACGATGGTGAATCAAGAAGGTCATCAACGG 474
Query 481 ATTGGGACTGATCATCACCATGAGGATCAACGGTCTTCCGCCACTTCCTCCTCTTTTGTA 540
||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| |||
Sbjct 475 ATTGGGATTGATCATCACCATGAGGATCAACAGTCTTCCGCCACTTCATCCTCTTTCGTA 534
Query 541 TACACTGCATTACTCGACGAAAACAAGTGCTTGAAGAATGAAAACGAGTTATTAAGCTGC 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 535 TACACTGCATTACTCGACGAAAACAAATGCTTGAAGAATGAAAACGAGTTATTAAGCTGC 594
Query 601 GAACTGGGGAAAACCAAGAAGAAATGCAAGCAGCTTATGGAGTTGGTGGAGAGATACAGA 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GAACTTGGGAAAACCAAGAAGAAATGCAAGCAGCTTATGGAGTTGGTGGAGAGATACAGA 654
Query 661 GTagatgacgaagatgaaaccgatgaaaatgatgatgatgaagaagatgatgGGCTTAAG 720
| ||| |||||||||| ||| ||||||| | |||||||||||||||||| |||||||||
Sbjct 655 GGAGAAGACGAAGATGCAACTGATGAAA--G-TGATGATGAAGAAGATGAAGGGCTTAAG 711
Query 721 TTGTTCGGAGTAAAACTTGAATGA 744
||||||||||||||||||||||||
Sbjct 712 TTGTTCGGAGTAAAACTTGAATGA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5