BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321902

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42210.2 | Symbols: ATOEP16-3, OEP16-3 | Mitochondrial impor...   881    0.0  


> AT2G42210.2 | Symbols: ATOEP16-3, OEP16-3 | Mitochondrial import 
inner membrane translocase subunit Tim17/Tim22/Tim23 family 
protein | chr2:17590276-17591852 FORWARD LENGTH=1107
Length=1107

 Score =  881 bits (477),  Expect = 0.0
 Identities = 507/522 (97%), Gaps = 0/522 (0%)
 Strand=Plus/Plus

Query  1    ATGTTTTACTTGTGTGCGTTAGGTAGAACCGTAGAAGAAATCATGGATCCAGCTGAAATG  60
            |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  325  ATGTTTAACTTGTGTGCGTTAGGTAGAACAGTAGAAGAAATCATGGATCCAGCTGAAATG  384

Query  61   AGATATTTGGAAGAGGAGGATGGTCCGTTGATGAAGACAATCAAAGGTAGTATCACTGGT  120
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  385  AGATATTTGGAAGAAGAGGATGGTCCGTTGATGAAGACAATCAAAGGTAGTATCACTGGT  444

Query  121  TTTGGTGCTGGGACTATTTACGGAACCATTTTAGCGACGTGGAAAGATGTTCCAAGAGTG  180
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  445  TTTGGTGCTGGGACTATTTACGGAACCATTTTAGCCACATGGAAAGATGTTCCAAGAGTG  504

Query  181  GAGAGAAATGTGGCTCTTCCAGGACTTATTAGAACACTGAAGATGATGGGAACCCACGGG  240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  505  GAGAGAAATGTGGCTCTTCCAGGACTTATTAGAACACTGAAGATGATGGGAACCCATGGG  564

Query  241  CTGACTTTTGCTGCCATCGGAGGCGTTTACATCGGTGTTGAACAACTGGTTCAGAACTTT  300
            |||||||||||||| || ||||| |||||||||||||||||||| ||||||||||| |||
Sbjct  565  CTGACTTTTGCTGCTATAGGAGGTGTTTACATCGGTGTTGAACAGCTGGTTCAGAATTTT  624

Query  301  AGATCCAAGAGAGATTTTTACAATGGTGCTATTGGTGGTTTTGTGGCTGGAGCTTCTGTG  360
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  625  AGATCCAAGAGAGATTTTTACAATGGTGCTATTGGTGGTTTTGTCGCTGGAGCTTCTGTG  684

Query  361  CTTGGCTATAGAGCAAGGAGCATCCCAACAGCAATAGCTGCAGGTGCAACACTAGCTGTT  420
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  685  CTTGGCTATAGAGCAAGGAGCATCCCGACAGCGATAGCTGCAGGTGCAACACTAGCTGTT  744

Query  421  ACCTCTGCTTTGATTGATTCTGGAGGTCAGACCACAAGAGTAGACACTGGCAGAGAATAC  480
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  745  ACCTCTGCTTTGATTGATTCTGGAGGTCAGACCACAAGAGTAGACAATGGCAGAGAATAC  804

Query  481  TATCCTTACACCGTCGAGAAAAGAGCTGAAGCTGATTCCTGA  522
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  805  TATCCTTACACCGTCGAGAAAAGAGCTGAAGCTGATTCCTGA  846



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24966371059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5