BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg321905 Length=1545 Score E Sequences producing significant alignments: (Bits) Value AT2G42250.1 | Symbols: CYP712A1 | cytochrome P450, family 712, ... 2527 0.0 AT2G42247.1 | Symbols: | other RNA | chr2:17599370-17601825 FO... 1236 0.0 > AT2G42250.1 | Symbols: CYP712A1 | cytochrome P450, family 712, subfamily A, polypeptide 1 | chr2:17600075-17601849 REVERSE LENGTH=1685 Length=1685 Score = 2527 bits (1368), Expect = 0.0 Identities = 1488/1547 (96%), Gaps = 4/1547 (0%) Strand=Plus/Plus Query 1 ATGGATCTAGAACTAAACACTAACCTTATTATTCTCATCACATCCTTCG-TTTCTGCTTT 59 |||||| || ||||||||||||| || |||||||||||||||||||| | ||| | |||| Sbjct 141 ATGGATTTAAAACTAAACACTAAACTAATTATTCTCATCACATCCTTAGCTTT-TCCTTT 199 Query 60 CATGCTTTATGCTCTCTTCAAATGGTTCTTGAGGGAGCAGGGTTCAATGGCTGCTACGAA 119 |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| Sbjct 200 CATGCTTTATGCTCTCTTCAAATGGTTCTTGAAAGAGCAAGGTTCATTGGCTGCTACGAA 259 Query 120 GCTGCCACAGAGCCCTCCAGCTTTACCATTCATTGGCCACCTTCATTTGATAGGCAAAGT 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 GCTGCCACAGAGCCCTCCAGCTTTACCATTCATTGGCCACCTTCATTTGATAGGCAAAGT 319 Query 180 ATTGCCTGTCTCATTCCAGGGTCTAGCTCACAAGTATGGCCCACTCATGGAGATACGTCT 239 |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 320 ATTGCCTGTCTCATTCCAAAGTTTAGCTCACAAGTATGGCCCACTCATGGAGATACGTCT 379 Query 240 CGGTGCTTCTAAGTGCGTTGTGGTCTCAAGCTCTTCGGTGGCAAGAGAGATTTTCAAGGA 299 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 380 CGGTGCTTCTAAGTGCGTTGTGGTCTCAAGCTCTTCGGTGGCGAGAGAGATTTTCAAGGA 439 Query 300 GCAAGAGCTTAATTTCTCCTCGAGACCTGAGTTTGGATCTGCTGAGTATTTCAAGTATAG 359 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 440 GCAAGAGCTTAATTTCTCCTCGAGACCTGAGTTTGGTTCTGCAGAGTATTTCAAGTATAG 499 Query 360 AGGGTCCAGGTTTGTCCTTGCGCAGTATGGAGATTATTGGAGGTTCATGAAGAAACTGTG 419 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 500 AGGGTCCAGGTTTGTCCTTGCGCAGTATGGAGATTACTGGAGGTTCATGAAGAAGCTGTG 559 Query 420 CATGACTAAGCTTCTTGCTGTTCCACAGCTGGAGAAATTCGCTGACATCCGTGAGGAGGA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 560 CATGACTAAGCTTCTTGCTGTTCCACAGCTGGAGAAATTCGCTGACATCCGTGAGGAGGA 619 Query 480 GAAACTGAAGCTGATCGAGTCTGTGGCTAACTGTTGCGGAGAAGGGTTGCCTTGTGACTT 539 ||||||||||||| |||| ||||||||||| |||||| |||||||||||||||||||||| Sbjct 620 GAAACTGAAGCTGGTCGATTCTGTGGCTAAGTGTTGCAGAGAAGGGTTGCCTTGTGACTT 679 Query 540 GAGTAGCCAGTTCATAAAATACACCAACAATGTAATCTGCAGGATGGCGATGAGCACGAG 599 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 680 GAGTAGCCAGTTCATAAAATACACCAACAATGTAATCTGCAGGATGGCGATGAGCACCAG 739 Query 600 GTGTTCAGGTACTGATAATGAAGCGGAAGAGATAAGGAAGCTGGTGAAGAAAAGTTTGGA 659 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 740 GTGTTCAGGTACTGATAATGAAGCAGAAGAGATAAGGGAGCTGGTGAAGAAAAGTTTGGA 799 Query 660 GCTTGCGGGGAAGATCAGTGTAGGAGATGTGTTGGGGCCATTGAAAGTACTGGATTTTTC 719 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 800 GCTTGCGGGGAAGATCAGTGTAGGAGATGTGTTGGGGCCATTGAAAGTAATGGACTTTTC 859 Query 720 TGGGAACGGGAAGAAATTAGAGGCTGTAATGGAGAAATATGACCTGCTTGTAGAGAGGAT 779 ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || Sbjct 860 TGGGAACGGGAAGAAGTTAGTGGCTGTAATGGAGAAATATGACCTGCTTGTAGAGAGAAT 919 Query 780 TATGAAGGAACGTGAGGCAGAGGCAAAGAAGAAAGATGGTACCAGAAAGGATATTTTGGA 839 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 920 TATGAAGGAACGTGAGGCAAAGGCAAAGAAGAAAGATGGTACCAGAAAGGATATTTTGGA 979 Query 840 TATACTGTTGGATACTTACAGAGATCCCACTGCTGAAATGAAGATAACAAGGAATGACAT 899 |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 980 TATATTGTTGGAAACTTACAGAGATCCCACTGCTGAAATGAAGATAACGAGGAATGACAT 1039 Query 900 GAAATCTTTCCTGCTGGATGTTTTCATGGCGGGAACAGATACATCAGCAGCAGCAATGCA 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1040 GAAATCTTTCCTGCTGGATGTTTTCATGGCGGGAACAGATACATCAGCAGCAGCAATGCA 1099 Query 960 GTGGGCAATGGGGCAACTAATAAACCATCCACAAGCGTTCAACAAGTTAAGAGAAGAGAT 1019 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1100 GTGGGCAATGGGGCAACTAATAAACCATCCACAAGCGTTCAACAAGTTACGAGAAGAGAT 1159 Query 1020 CAATACCGTAGTTGGAAGTAAAAGACTGGTCAAAGAATCAGACGTTCCTAACCTACCTTA 1079 ||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 1160 CAATAACGTTGTTGGAAGTAAAAGACTGGTGAAAGAATCAGATGTTCCTAACCTTCCTTA 1219 Query 1080 CCTCCGAGCCGTCCTAAGGGAAACTCTGAGGCTCCACCCTTCAGCTCCTCTGATCATAAG 1139 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1220 CCTCCGAGCTGTCCTAAGGGAAACTCTGAGGCTCCACCCTTCAGCTCCTCTGATCATAAG 1279 Query 1140 AGAATGCGCAGAAGACTGCCAGGTGCATGGGTGCCTTGTCAAGTCAAAAACACGTGTACT 1199 ||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| Sbjct 1280 AGAATGCGCAGAAGACTGCCAGGTGAACGGGTGCCTTGTCAAGTCAAAAACCCGTGTACT 1339 Query 1200 CGTAAATGTTTATGCAATCATGCGAGATTCAGAACTATGGACAGATGCAGACAGATTCAT 1259 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1340 CGTAAATGTTTATGCAATCATGCGAGATTCAGAACTATGGGCAGATGCAGACAGATTCAT 1399 Query 1260 CCCGGAGAGATTTCTAGAGAGCTCTGAAGAGAAGATAGGGGAACACCAGATGGAGTTCAA 1319 ||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1400 CCCCGAGAGATTTCTAGAGAGCTCTGAAGAGAAGATAGGTGAACACCAGATGCAGTTCAA 1459 Query 1320 GGGGCAGAATTTCCGTTACCTTCCGTTTGGGAGTGGAAGAAGAGGATGTCCAGGAGCATC 1379 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1460 GGGGCAGAATTTCCGTTACCTTCCATTTGGGAGTGGAAGGAGAGGATGTCCAGGAGCATC 1519 Query 1380 CCTGGCCATGAATGTGATGCATATAGGTGTGGGTTCATTGGTGCAGCGCTTCGACTGGAA 1439 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1520 CCTTGCCATGAATGTGATGCATATAGGTGTGGGTTCATTGGTGCAGCGCTTCGACTGGAA 1579 Query 1440 GAGTGTTGATGGACAGAAGGTTGATCTGAGCCAAGGTTCTGGTTTTTCTGCTGAGATGGC 1499 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1580 GAGTGTTGATGGACAGAAGGTCGATCTGAGCCAAGGTTCTGGTTTTTCTGCTGAGATGGC 1639 Query 1500 TCGACCACCTGTGTGCAA-CACTGTTGATCACTTTAAAACCTTCTAA 1545 |||||||| ||||||||| | |||| ||||||||||| ||||||||| Sbjct 1640 TCGACCACTTGTGTGCAATC-CTGTGGATCACTTTAACACCTTCTAA 1685 > AT2G42247.1 | Symbols: | other RNA | chr2:17599370-17601825 FORWARD LENGTH=1558 Length=1558 Score = 1236 bits (669), Expect = 0.0 Identities = 732/763 (96%), Gaps = 2/763 (0%) Strand=Plus/Minus Query 1 ATGGATCTAGAACTAAACACTAACCTTATTATTCTCATCACATCCTTCG-TTTCTGCTTT 59 |||||| || ||||||||||||| || |||||||||||||||||||| | ||| | |||| Sbjct 1442 ATGGATTTAAAACTAAACACTAAACTAATTATTCTCATCACATCCTTAGCTTT-TCCTTT 1384 Query 60 CATGCTTTATGCTCTCTTCAAATGGTTCTTGAGGGAGCAGGGTTCAATGGCTGCTACGAA 119 |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| Sbjct 1383 CATGCTTTATGCTCTCTTCAAATGGTTCTTGAAAGAGCAAGGTTCATTGGCTGCTACGAA 1324 Query 120 GCTGCCACAGAGCCCTCCAGCTTTACCATTCATTGGCCACCTTCATTTGATAGGCAAAGT 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1323 GCTGCCACAGAGCCCTCCAGCTTTACCATTCATTGGCCACCTTCATTTGATAGGCAAAGT 1264 Query 180 ATTGCCTGTCTCATTCCAGGGTCTAGCTCACAAGTATGGCCCACTCATGGAGATACGTCT 239 |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1263 ATTGCCTGTCTCATTCCAAAGTTTAGCTCACAAGTATGGCCCACTCATGGAGATACGTCT 1204 Query 240 CGGTGCTTCTAAGTGCGTTGTGGTCTCAAGCTCTTCGGTGGCAAGAGAGATTTTCAAGGA 299 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1203 CGGTGCTTCTAAGTGCGTTGTGGTCTCAAGCTCTTCGGTGGCGAGAGAGATTTTCAAGGA 1144 Query 300 GCAAGAGCTTAATTTCTCCTCGAGACCTGAGTTTGGATCTGCTGAGTATTTCAAGTATAG 359 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1143 GCAAGAGCTTAATTTCTCCTCGAGACCTGAGTTTGGTTCTGCAGAGTATTTCAAGTATAG 1084 Query 360 AGGGTCCAGGTTTGTCCTTGCGCAGTATGGAGATTATTGGAGGTTCATGAAGAAACTGTG 419 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 1083 AGGGTCCAGGTTTGTCCTTGCGCAGTATGGAGATTACTGGAGGTTCATGAAGAAGCTGTG 1024 Query 420 CATGACTAAGCTTCTTGCTGTTCCACAGCTGGAGAAATTCGCTGACATCCGTGAGGAGGA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 CATGACTAAGCTTCTTGCTGTTCCACAGCTGGAGAAATTCGCTGACATCCGTGAGGAGGA 964 Query 480 GAAACTGAAGCTGATCGAGTCTGTGGCTAACTGTTGCGGAGAAGGGTTGCCTTGTGACTT 539 ||||||||||||| |||| ||||||||||| |||||| |||||||||||||||||||||| Sbjct 963 GAAACTGAAGCTGGTCGATTCTGTGGCTAAGTGTTGCAGAGAAGGGTTGCCTTGTGACTT 904 Query 540 GAGTAGCCAGTTCATAAAATACACCAACAATGTAATCTGCAGGATGGCGATGAGCACGAG 599 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 903 GAGTAGCCAGTTCATAAAATACACCAACAATGTAATCTGCAGGATGGCGATGAGCACCAG 844 Query 600 GTGTTCAGGTACTGATAATGAAGCGGAAGAGATAAGGAAGCTGGTGAAGAAAAGTTTGGA 659 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 843 GTGTTCAGGTACTGATAATGAAGCAGAAGAGATAAGGGAGCTGGTGAAGAAAAGTTTGGA 784 Query 660 GCTTGCGGGGAAGATCAGTGTAGGAGATGTGTTGGGGCCATTGAAAGTACTGGATTTTTC 719 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 783 GCTTGCGGGGAAGATCAGTGTAGGAGATGTGTTGGGGCCATTGAAAGTAATGGACTTTTC 724 Query 720 TGGGAACGGGAAGAAATTAGAGGCTGTAATGGAGAAATATGAC 762 ||||||||||||||| |||| |||||||||||||||||||||| Sbjct 723 TGGGAACGGGAAGAAGTTAGTGGCTGTAATGGAGAAATATGAC 681 Score = 335 bits (181), Expect = 8e-91 Identities = 200/209 (96%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 1338 CCTTCCGTTTGGGAGTGGAAGAAGAGGATGTCCAGGAGCATCCCTGGCCATGAATGTGAT 1397 |||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 506 CCTTCCATTTGGGAGTGGAAGGAGAGGATGTCCAGGAGCATCCCTTGCCATGAATGTGAT 447 Query 1398 GCATATAGGTGTGGGTTCATTGGTGCAGCGCTTCGACTGGAAGAGTGTTGATGGACAGAA 1457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 446 GCATATAGGTGTGGGTTCATTGGTGCAGCGCTTCGACTGGAAGAGTGTTGATGGACAGAA 387 Query 1458 GGTTGATCTGAGCCAAGGTTCTGGTTTTTCTGCTGAGATGGCTCGACCACCTGTGTGCAA 1517 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 386 GGTCGATCTGAGCCAAGGTTCTGGTTTTTCTGCTGAGATGGCTCGACCACTTGTGTGCAA 327 Query 1518 -CACTGTTGATCACTTTAAAACCTTCTAA 1545 | |||| ||||||||||| ||||||||| Sbjct 326 TC-CTGTGGATCACTTTAACACCTTCTAA 299 Score = 176 bits (95), Expect = 5e-43 Identities = 103/107 (96%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1070 ACCTACCTTACCTCCGAGCCGTCCTAAGGGAAACTCTGAGGCTCCACCCTTCAGCTCCTC 1129 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 609 ACCTTCCTTACCTCCGAGCTGTCCTAAGGGAAACTCTGAGGCTCCACCCTTCAGCTCCTC 550 Query 1130 TGATCATAAGAGAATGCGCAGAAGACTGCCAGGTGCATGGGTGCCTT 1176 ||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 549 TGATCATAAGAGAATGCGCAGAAGACTGCCAGGTGAACGGGTGCCTT 503 Score = 111 bits (60), Expect = 2e-23 Identities = 65/67 (97%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 857 ACAGAGATCCCACTGCTGAAATGAAGATAACAAGGAATGACATGAAATCTTTCCTGCTGG 916 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 682 ACAGAGATCCCACTGCTGAAATGAAGATAACGAGGAATGACATGAAATCTTTCCTGCTGG 623 Query 917 -ATGTTT 922 |||||| Sbjct 622 TATGTTT 616 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76254627855 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5