BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321905
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42250.1 | Symbols: CYP712A1 | cytochrome P450, family 712, ... 2527 0.0
AT2G42247.1 | Symbols: | other RNA | chr2:17599370-17601825 FO... 1236 0.0
> AT2G42250.1 | Symbols: CYP712A1 | cytochrome P450, family 712,
subfamily A, polypeptide 1 | chr2:17600075-17601849 REVERSE
LENGTH=1685
Length=1685
Score = 2527 bits (1368), Expect = 0.0
Identities = 1488/1547 (96%), Gaps = 4/1547 (0%)
Strand=Plus/Plus
Query 1 ATGGATCTAGAACTAAACACTAACCTTATTATTCTCATCACATCCTTCG-TTTCTGCTTT 59
|||||| || ||||||||||||| || |||||||||||||||||||| | ||| | ||||
Sbjct 141 ATGGATTTAAAACTAAACACTAAACTAATTATTCTCATCACATCCTTAGCTTT-TCCTTT 199
Query 60 CATGCTTTATGCTCTCTTCAAATGGTTCTTGAGGGAGCAGGGTTCAATGGCTGCTACGAA 119
|||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct 200 CATGCTTTATGCTCTCTTCAAATGGTTCTTGAAAGAGCAAGGTTCATTGGCTGCTACGAA 259
Query 120 GCTGCCACAGAGCCCTCCAGCTTTACCATTCATTGGCCACCTTCATTTGATAGGCAAAGT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 GCTGCCACAGAGCCCTCCAGCTTTACCATTCATTGGCCACCTTCATTTGATAGGCAAAGT 319
Query 180 ATTGCCTGTCTCATTCCAGGGTCTAGCTCACAAGTATGGCCCACTCATGGAGATACGTCT 239
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 320 ATTGCCTGTCTCATTCCAAAGTTTAGCTCACAAGTATGGCCCACTCATGGAGATACGTCT 379
Query 240 CGGTGCTTCTAAGTGCGTTGTGGTCTCAAGCTCTTCGGTGGCAAGAGAGATTTTCAAGGA 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 380 CGGTGCTTCTAAGTGCGTTGTGGTCTCAAGCTCTTCGGTGGCGAGAGAGATTTTCAAGGA 439
Query 300 GCAAGAGCTTAATTTCTCCTCGAGACCTGAGTTTGGATCTGCTGAGTATTTCAAGTATAG 359
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 440 GCAAGAGCTTAATTTCTCCTCGAGACCTGAGTTTGGTTCTGCAGAGTATTTCAAGTATAG 499
Query 360 AGGGTCCAGGTTTGTCCTTGCGCAGTATGGAGATTATTGGAGGTTCATGAAGAAACTGTG 419
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 500 AGGGTCCAGGTTTGTCCTTGCGCAGTATGGAGATTACTGGAGGTTCATGAAGAAGCTGTG 559
Query 420 CATGACTAAGCTTCTTGCTGTTCCACAGCTGGAGAAATTCGCTGACATCCGTGAGGAGGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 CATGACTAAGCTTCTTGCTGTTCCACAGCTGGAGAAATTCGCTGACATCCGTGAGGAGGA 619
Query 480 GAAACTGAAGCTGATCGAGTCTGTGGCTAACTGTTGCGGAGAAGGGTTGCCTTGTGACTT 539
||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 620 GAAACTGAAGCTGGTCGATTCTGTGGCTAAGTGTTGCAGAGAAGGGTTGCCTTGTGACTT 679
Query 540 GAGTAGCCAGTTCATAAAATACACCAACAATGTAATCTGCAGGATGGCGATGAGCACGAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 680 GAGTAGCCAGTTCATAAAATACACCAACAATGTAATCTGCAGGATGGCGATGAGCACCAG 739
Query 600 GTGTTCAGGTACTGATAATGAAGCGGAAGAGATAAGGAAGCTGGTGAAGAAAAGTTTGGA 659
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 740 GTGTTCAGGTACTGATAATGAAGCAGAAGAGATAAGGGAGCTGGTGAAGAAAAGTTTGGA 799
Query 660 GCTTGCGGGGAAGATCAGTGTAGGAGATGTGTTGGGGCCATTGAAAGTACTGGATTTTTC 719
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 800 GCTTGCGGGGAAGATCAGTGTAGGAGATGTGTTGGGGCCATTGAAAGTAATGGACTTTTC 859
Query 720 TGGGAACGGGAAGAAATTAGAGGCTGTAATGGAGAAATATGACCTGCTTGTAGAGAGGAT 779
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 860 TGGGAACGGGAAGAAGTTAGTGGCTGTAATGGAGAAATATGACCTGCTTGTAGAGAGAAT 919
Query 780 TATGAAGGAACGTGAGGCAGAGGCAAAGAAGAAAGATGGTACCAGAAAGGATATTTTGGA 839
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 920 TATGAAGGAACGTGAGGCAAAGGCAAAGAAGAAAGATGGTACCAGAAAGGATATTTTGGA 979
Query 840 TATACTGTTGGATACTTACAGAGATCCCACTGCTGAAATGAAGATAACAAGGAATGACAT 899
|||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 980 TATATTGTTGGAAACTTACAGAGATCCCACTGCTGAAATGAAGATAACGAGGAATGACAT 1039
Query 900 GAAATCTTTCCTGCTGGATGTTTTCATGGCGGGAACAGATACATCAGCAGCAGCAATGCA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 GAAATCTTTCCTGCTGGATGTTTTCATGGCGGGAACAGATACATCAGCAGCAGCAATGCA 1099
Query 960 GTGGGCAATGGGGCAACTAATAAACCATCCACAAGCGTTCAACAAGTTAAGAGAAGAGAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1100 GTGGGCAATGGGGCAACTAATAAACCATCCACAAGCGTTCAACAAGTTACGAGAAGAGAT 1159
Query 1020 CAATACCGTAGTTGGAAGTAAAAGACTGGTCAAAGAATCAGACGTTCCTAACCTACCTTA 1079
||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1160 CAATAACGTTGTTGGAAGTAAAAGACTGGTGAAAGAATCAGATGTTCCTAACCTTCCTTA 1219
Query 1080 CCTCCGAGCCGTCCTAAGGGAAACTCTGAGGCTCCACCCTTCAGCTCCTCTGATCATAAG 1139
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 CCTCCGAGCTGTCCTAAGGGAAACTCTGAGGCTCCACCCTTCAGCTCCTCTGATCATAAG 1279
Query 1140 AGAATGCGCAGAAGACTGCCAGGTGCATGGGTGCCTTGTCAAGTCAAAAACACGTGTACT 1199
||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 1280 AGAATGCGCAGAAGACTGCCAGGTGAACGGGTGCCTTGTCAAGTCAAAAACCCGTGTACT 1339
Query 1200 CGTAAATGTTTATGCAATCATGCGAGATTCAGAACTATGGACAGATGCAGACAGATTCAT 1259
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1340 CGTAAATGTTTATGCAATCATGCGAGATTCAGAACTATGGGCAGATGCAGACAGATTCAT 1399
Query 1260 CCCGGAGAGATTTCTAGAGAGCTCTGAAGAGAAGATAGGGGAACACCAGATGGAGTTCAA 1319
||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1400 CCCCGAGAGATTTCTAGAGAGCTCTGAAGAGAAGATAGGTGAACACCAGATGCAGTTCAA 1459
Query 1320 GGGGCAGAATTTCCGTTACCTTCCGTTTGGGAGTGGAAGAAGAGGATGTCCAGGAGCATC 1379
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1460 GGGGCAGAATTTCCGTTACCTTCCATTTGGGAGTGGAAGGAGAGGATGTCCAGGAGCATC 1519
Query 1380 CCTGGCCATGAATGTGATGCATATAGGTGTGGGTTCATTGGTGCAGCGCTTCGACTGGAA 1439
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 CCTTGCCATGAATGTGATGCATATAGGTGTGGGTTCATTGGTGCAGCGCTTCGACTGGAA 1579
Query 1440 GAGTGTTGATGGACAGAAGGTTGATCTGAGCCAAGGTTCTGGTTTTTCTGCTGAGATGGC 1499
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1580 GAGTGTTGATGGACAGAAGGTCGATCTGAGCCAAGGTTCTGGTTTTTCTGCTGAGATGGC 1639
Query 1500 TCGACCACCTGTGTGCAA-CACTGTTGATCACTTTAAAACCTTCTAA 1545
|||||||| ||||||||| | |||| ||||||||||| |||||||||
Sbjct 1640 TCGACCACTTGTGTGCAATC-CTGTGGATCACTTTAACACCTTCTAA 1685
> AT2G42247.1 | Symbols: | other RNA | chr2:17599370-17601825
FORWARD LENGTH=1558
Length=1558
Score = 1236 bits (669), Expect = 0.0
Identities = 732/763 (96%), Gaps = 2/763 (0%)
Strand=Plus/Minus
Query 1 ATGGATCTAGAACTAAACACTAACCTTATTATTCTCATCACATCCTTCG-TTTCTGCTTT 59
|||||| || ||||||||||||| || |||||||||||||||||||| | ||| | ||||
Sbjct 1442 ATGGATTTAAAACTAAACACTAAACTAATTATTCTCATCACATCCTTAGCTTT-TCCTTT 1384
Query 60 CATGCTTTATGCTCTCTTCAAATGGTTCTTGAGGGAGCAGGGTTCAATGGCTGCTACGAA 119
|||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct 1383 CATGCTTTATGCTCTCTTCAAATGGTTCTTGAAAGAGCAAGGTTCATTGGCTGCTACGAA 1324
Query 120 GCTGCCACAGAGCCCTCCAGCTTTACCATTCATTGGCCACCTTCATTTGATAGGCAAAGT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GCTGCCACAGAGCCCTCCAGCTTTACCATTCATTGGCCACCTTCATTTGATAGGCAAAGT 1264
Query 180 ATTGCCTGTCTCATTCCAGGGTCTAGCTCACAAGTATGGCCCACTCATGGAGATACGTCT 239
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1263 ATTGCCTGTCTCATTCCAAAGTTTAGCTCACAAGTATGGCCCACTCATGGAGATACGTCT 1204
Query 240 CGGTGCTTCTAAGTGCGTTGTGGTCTCAAGCTCTTCGGTGGCAAGAGAGATTTTCAAGGA 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1203 CGGTGCTTCTAAGTGCGTTGTGGTCTCAAGCTCTTCGGTGGCGAGAGAGATTTTCAAGGA 1144
Query 300 GCAAGAGCTTAATTTCTCCTCGAGACCTGAGTTTGGATCTGCTGAGTATTTCAAGTATAG 359
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1143 GCAAGAGCTTAATTTCTCCTCGAGACCTGAGTTTGGTTCTGCAGAGTATTTCAAGTATAG 1084
Query 360 AGGGTCCAGGTTTGTCCTTGCGCAGTATGGAGATTATTGGAGGTTCATGAAGAAACTGTG 419
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1083 AGGGTCCAGGTTTGTCCTTGCGCAGTATGGAGATTACTGGAGGTTCATGAAGAAGCTGTG 1024
Query 420 CATGACTAAGCTTCTTGCTGTTCCACAGCTGGAGAAATTCGCTGACATCCGTGAGGAGGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 CATGACTAAGCTTCTTGCTGTTCCACAGCTGGAGAAATTCGCTGACATCCGTGAGGAGGA 964
Query 480 GAAACTGAAGCTGATCGAGTCTGTGGCTAACTGTTGCGGAGAAGGGTTGCCTTGTGACTT 539
||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 963 GAAACTGAAGCTGGTCGATTCTGTGGCTAAGTGTTGCAGAGAAGGGTTGCCTTGTGACTT 904
Query 540 GAGTAGCCAGTTCATAAAATACACCAACAATGTAATCTGCAGGATGGCGATGAGCACGAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 903 GAGTAGCCAGTTCATAAAATACACCAACAATGTAATCTGCAGGATGGCGATGAGCACCAG 844
Query 600 GTGTTCAGGTACTGATAATGAAGCGGAAGAGATAAGGAAGCTGGTGAAGAAAAGTTTGGA 659
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 843 GTGTTCAGGTACTGATAATGAAGCAGAAGAGATAAGGGAGCTGGTGAAGAAAAGTTTGGA 784
Query 660 GCTTGCGGGGAAGATCAGTGTAGGAGATGTGTTGGGGCCATTGAAAGTACTGGATTTTTC 719
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 783 GCTTGCGGGGAAGATCAGTGTAGGAGATGTGTTGGGGCCATTGAAAGTAATGGACTTTTC 724
Query 720 TGGGAACGGGAAGAAATTAGAGGCTGTAATGGAGAAATATGAC 762
||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 723 TGGGAACGGGAAGAAGTTAGTGGCTGTAATGGAGAAATATGAC 681
Score = 335 bits (181), Expect = 8e-91
Identities = 200/209 (96%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 1338 CCTTCCGTTTGGGAGTGGAAGAAGAGGATGTCCAGGAGCATCCCTGGCCATGAATGTGAT 1397
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 506 CCTTCCATTTGGGAGTGGAAGGAGAGGATGTCCAGGAGCATCCCTTGCCATGAATGTGAT 447
Query 1398 GCATATAGGTGTGGGTTCATTGGTGCAGCGCTTCGACTGGAAGAGTGTTGATGGACAGAA 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 GCATATAGGTGTGGGTTCATTGGTGCAGCGCTTCGACTGGAAGAGTGTTGATGGACAGAA 387
Query 1458 GGTTGATCTGAGCCAAGGTTCTGGTTTTTCTGCTGAGATGGCTCGACCACCTGTGTGCAA 1517
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 386 GGTCGATCTGAGCCAAGGTTCTGGTTTTTCTGCTGAGATGGCTCGACCACTTGTGTGCAA 327
Query 1518 -CACTGTTGATCACTTTAAAACCTTCTAA 1545
| |||| ||||||||||| |||||||||
Sbjct 326 TC-CTGTGGATCACTTTAACACCTTCTAA 299
Score = 176 bits (95), Expect = 5e-43
Identities = 103/107 (96%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 1070 ACCTACCTTACCTCCGAGCCGTCCTAAGGGAAACTCTGAGGCTCCACCCTTCAGCTCCTC 1129
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 609 ACCTTCCTTACCTCCGAGCTGTCCTAAGGGAAACTCTGAGGCTCCACCCTTCAGCTCCTC 550
Query 1130 TGATCATAAGAGAATGCGCAGAAGACTGCCAGGTGCATGGGTGCCTT 1176
||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 549 TGATCATAAGAGAATGCGCAGAAGACTGCCAGGTGAACGGGTGCCTT 503
Score = 111 bits (60), Expect = 2e-23
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 857 ACAGAGATCCCACTGCTGAAATGAAGATAACAAGGAATGACATGAAATCTTTCCTGCTGG 916
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 682 ACAGAGATCCCACTGCTGAAATGAAGATAACGAGGAATGACATGAAATCTTTCCTGCTGG 623
Query 917 -ATGTTT 922
||||||
Sbjct 622 TATGTTT 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5