BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321906
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42260.1 | Symbols: UVI4, PYM | uv-b-insensitive 4 | chr2:17... 1221 0.0
> AT2G42260.1 | Symbols: UVI4, PYM | uv-b-insensitive 4 | chr2:17601955-17603633
REVERSE LENGTH=1204
Length=1204
Score = 1221 bits (661), Expect = 0.0
Identities = 743/782 (95%), Gaps = 7/782 (1%)
Strand=Plus/Plus
Query 1 ATGCCAGAAGCAAGAGACCGAATAGAGAGACCAGTTGATTACCCAGCCGCATTTCTCAAT 60
|||||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 140 ATGCCAGAAGCACGAGATCGAATAGAGAGGCAAGTTGATTACCCAGCCGCATTTCTCAAT 199
Query 61 AGACGCTCGCATGGTATTTTACTTGACGAACCAGCAACACACCACAATTTGTTTGGGTCT 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 200 AGACGCTCGCATGGTATTTTACTTGACGAACCAGCAACACAGCACAATTTGTTTGGGTCT 259
Query 121 CCGGTTCAGAGAGTGCCGTCCGAAGCTACA-G-GG-CTTGGGTCAGTTGGTCAAGGATCT 177
||||||||||||||||| || ||||||||| | || ||||||||| ||||||||||||||
Sbjct 260 CCGGTTCAGAGAGTGCCATCGGAAGCTACAGGAGGACTTGGGTCAATTGGTCAAGGATCT 319
Query 178 ATGACGGGAAGAGGTGGGCTTGTGAGGGGTAATTTCGGTATTCGGCGGACTGGTGGTGGT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 ATGACGGGAAGAGGTGGGCTTGTGAGGGGTAATTTCGGTATTCGGCGGACTGGTGGTGGT 379
Query 238 AGAAGAGGTCAAATTCAATTTAGATCGCCACAGGGACGAGAGAACATGAGCTTGGGTGTT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 AGAAGAGGTCAAATTCAATTTAGATCGCCACAGGGACGAGAGAACATGAGCTTGGGTGTT 439
Query 298 ACAAGACGTGGAAGGGCTCGTGCTTCAAATTCTGTGTTACCTTCTTGGTATCCAAGAACG 357
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 440 ACAAGGCGTGGAAGGGCTCGTGCTTCAAATTCTGTCTTACCTTCTTGGTATCCAAGAACG 499
Query 358 CCCCTCCGTGATGTTTCTGCTGTTGTTAGGGCTATTGAGAGAAGGAGAGCTCGTATGGGA 417
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 500 CCCCTCCGTGATATTTCTGCCGTTGTTAGGGCTATTGAGAGAAGGAGAGCTCGTATGGGA 559
Query 418 GAAGGCGTTGGCCGAGATATTGAGACCCCAACTCCACAACAGCTTGGGGTTCTTGATTCT 477
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 560 GAAGGTGTTGGCCGAGATATTGAGACCCCAACTCCACAACAACTTGGGGTTCTTGATTCT 619
Query 478 CTAGTACCACTT-TCAGGTGCTCAGCTCGAGCATGATTACTCTATGGTTACTCCTGGTCC 536
|||||||| || ||||||||||| |||||||| || || |||||||||||||| |||||
Sbjct 620 CTAGTACCG-TTGTCAGGTGCTCATCTCGAGCACGACTATTCTATGGTTACTCCCGGTCC 678
Query 537 ATCTGTTGGATTCAAGCGTCCCTGGCCACCCTCAACTGCTAAAGTCCATCAGATTCTGCT 596
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 679 ATCTATTGGATTCAAGCGTCCTTGGCCACCCTCAACTGCTAAAGTCCATCAGATTTTGCT 738
Query 597 CGATATCACAAGAGAGAATACAGGGGAAGAAGATGCCCTCACTCCACAGAAGAAGCTCCT 656
||| ||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 739 CGACATCACAAGAGAAAACACAGGGGAAGAAGATGCCCTCACTCCAGAGAAGAAGCTCCT 798
Query 657 CAACTCTATTGACAAAGTGGAGAAGGTTGTGATGGAAGAGATTCAGAAAATGAAGAGCAC 716
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 CAACTCTATTGATAAAGTGGAGAAGGTTGTGATGGAAGAGATTCAGAAAATGAAGAGCAC 858
Query 717 TCCTAGTGC-AAAGAGAGCAGAAAGGGAGAAAAGGGTTCGGACGTTAATGTCAATGCGAT 775
||||||||| ||| |||||||||||||||||||| ||| ||||| ||||||| |||||||
Sbjct 859 TCCTAGTGCTAAA-AGAGCAGAAAGGGAGAAAAGAGTTAGGACGCTAATGTCGATGCGAT 917
Query 776 GA 777
||
Sbjct 918 GA 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5